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. Author manuscript; available in PMC: 2013 May 22.
Published in final edited form as: Nat Methods. 2009 Aug 9;6(9):677–681. doi: 10.1038/nmeth.1363

Figure 2.

Figure 2

Performance of BreakDancer in simulation. TPR and FPR of BreakDancerMax (BDMax) at the confidence threshold of Q ≥ 30 are shown. TPR analytic refers to the percent of variants that can hypothetically be detected by BDMax under an analytic model (Online Methods). TPR detectable is the percent of variants hose flanking regions (300 bp both to the left and to the right) contain 2 or more confidently mapped ARPs in the MAQ alignment. The performance of BreakDancerMini (BDMini) is characterized by its TPR and FPR. The combined performance (BD all) is obtained by merging the results of these to programs.