Table 2.

Associations between SNPs and HNSCC

Gene	No. of Cases	No. of Controls	Crude OR	95% CI
ADH1B (rs1229984)
C/C	530	593	Ref.
T/C	38	76	0.56	0.37	0.84
T/T	5	5	1.12	0.32	3.89
ADH7 (rs1573496)
G/G	471	536	Ref.
C/G	97	131	0.84	0.63	1.13
C/C	4	7	0.65	0.19	2.24
Missing	3	2
CHRN (rs16969968)
G/G	274	302	Ref.
A/G	247	298	0.91	0.72	1.16
A/A	51	74	0.76	0.51	1.13
Missing	3	2
COL5A3 (rs2287802)
A/A	211	255	Ref.
A/G	292	331	1.07	0.84	1.36
G/G	69	88	0.95	0.66	1.36
Missing	3	2
HEL308 (rs1494961)
C/C	165	161	Ref.
C/T	264	330	0.78	0.60	1.02
T/T	143	179	0.78	0.57	1.06
Missing	3	6
FCRL5 (rs2012199)
T/T	407	492	Ref.
C/T	143	161	1.07	0.83	1.39
C/C	14	11	1.54	0.69	3.43
Missing	11	12
ASPH (rs1431918)
G/G	196	240	Ref.
A/G	269	338	0.98	0.76	1.25
A/A	108	94	1.41	1.01	1.97
Missing	2	4
IL1RL1 (rs1041973)
C/C	294	337	Ref.
A/C	230	282	0.94	0.74	1.18
A/A	48	52	1.06	0.69	1.61
Missing	3	5
FHOD3 (rs4799863)
A/A	179	173	Ref.
A/G	284	345	0.80	0.61	1.03
G/G	106	152	0.67	0.49	0.93
Missing	6	6
RBMS3 (rs7431530)
C/C	300	329	Ref.
C/T	228	282	0.89	0.70	1.12
T/T	41	56	0.80	0.52	1.24
Missing	6	9
TBX3 (rs11067362)
T/T	460	552	Ref.
C/T	102	109	1.12	0.83	1.51
C/C	7	7	1.20	0.42	3.45
Missing	6	8
OPRD1 (rs16837730)
C/C	509	610	Ref.
C/T	58	57	1.22	0.83	1.79
Missing	8	9
PRIC285 (rs3810481)
G/G	397	485	Ref.
A/G	148	168	1.08	0.83	1.39
A/A	21	16	1.60	0.83	3.11
Missing	9	7
FLJ13089 (rs4767364)
G/G	247	351	Ref.
A/G	240	258	1.32	1.04	1.68
A/A	74	54	1.95	1.32	2.87
Missing	14	13
ZNF326 (rs10801805)
G/G	229	281	Ref.
A/G	257	293	1.08	0.85	1.37
A/A	78	94	1.02	0.72	1.44
Missing	11	8
MSH5 (rs2299851)
G/G	470	571	Ref.
A/G	92	91	1.23	0.90	1.68
A/A	4	4	1.22	0.30	4.88
Missing	9	10
FLJ35784 (rs484870)
A/A	221	263	Ref.
A/G	263	316	0.99	0.78	1.26
G/G	82	89	1.10	0.77	1.56
Missing	9	8
C6orf15 (rs2517452)
C/C	162	220	Ref.
C/T	291	319	1.24	0.96	1.60
T/T	112	127	1.20	0.87	1.66
Missing	10	10

Abbreviations: SNPS= single-nucleotide polymorphisms; HNSCC=head and neck squamous cell carcinoma