TABLE 1.
Sequences of the RNA-dependent RNA polymerase genes of highly pathogenic viruses tiled on the PathogenID v2.0 microarray
| Family | Genus | Species | Subtype/Strain | Tiled sequence size (nucleotides): location along the L segment (accession no.) |
|---|---|---|---|---|
| ARENAVIRIDAE | Arenavirus (Old World) | Lassa virus | Josiah—Sierra Leone | 525: 4259–4783 (U63094.1) |
| Arenavirus (New World) | Machupo virus | Carvallo—Bolivia | 528: 2469–2996 (AY358021.2) | |
| Guanarito virus | INH-95551—Venezuela | 528: 4099–4626 (AY216504.2) | ||
| Junin virus | XJ13—Argentina | 528: 2462–2989 (FJ805377.1) | ||
| BUNYAVIRIDAE | Nairovirus | Crimean–Congo haemorrhagic fever virus | IbAr10200—Nigeria | 531: 2717–3247 (AY389361.2) |
| Hantavirus | Hantaan virus | 76–118—Korea | 510: 3131–3640 (X55901.1) | |
| Puumala virus | Sotkamo—Finland | 531: 4705–5235 (Z66548.1) | ||
| Seoul virus | 80–39—South Korea | 552: 3055–3606 (X56492.1) | ||
| Dobrava-Belgrade virus | DOBV/Ano-Poroia/Af19/1999—Greece | 531: 3905–4435 (AJ410617.1) | ||
| Sin Nombre virus | NM R11—New Mexico | 528: 4857–5384 (L37902.1) | ||
| Phlebovirus | Rift Valley fever virus | MP-12—Egypt Sharqiya | 549: 5026–5574 (DQ375404.1) | |
| FLAVIVIRIDAE | Flavivirus | Kyasanur Forest disease virus | KFD P 9605—India | 504: 8463–8966 (HM055369.1) |
| Yellow fever virus | 17D RKI—vaccine strain | 504: 8429–8932 (JN628279.1) | ||
| Tick-borne encephalitis virus | Neudoerfl—Austria | 501: 134–634a (EU303230.1) | ||
| FILOVIRIDAE | Ebolavirus | Reston ebolavirus | Pennsylvania | 528: 13611–14138b (AF522874.1) |
| Zaire ebolavirus | Mayinga—1976 | 528: 13642–14169b (AF086833.2) | ||
| Marburgvirus | Marburg marburgvirus | Popp | 528: 2266–2793 (X68494.1) | |
| PARAMYXOVIRIDAE | Henipavirus | Nipah virus | UMMC1—Malaysia | 528: 13743–14270b (AY029767.1) |
| Hendra virus | Australia | 528: 13731–1425b (AF017149.2) | ||
a
Location referred to the NS5 gene.
b
Location referred to the entire genome.