TABLE 2.

Microarray detection of prototype viruses and geographical variants

				Detection in mixtureb
				1	2	3	4	5	6	7	8	9	10	11	12
Sequence tiled	Viral strain/Variant tested	Identity tiled seq/virus seq (%)	Call ratea(%)
Lassa virus Josiah—Sierra Leone	Josiah—Sierra Leonec	100	98.4				X
	Ivory Coast (AV)c	81	28.7					X
	Guineac	NA	98.8						X
Junin virus XJ13—Argentina	XJ13d	100	98.0												X
Crimean–Congo haemorrhagic fever virus IbAr10200—Nigeria	IbAr10200, Nigeriac	100	99.6		X
	Ar-39554, Mauritaniac	98	98.0				X
	Tokat 2003, Turkeyc	89	62.9	X
	BA66019, Chinac	86	30.9			X
Hantaan virus 76–118—Korea	76–118 Koreac	100	97.3							X
Sin Nombre virus NM R11—New Mexico	NM R11—New Mexicod	100	99.8											X
Seoul virus 80–39—South Korea	Tchoupitoulas virusc	98	98.3						X
Dobrava-Belgrade virus
DOBV/Ano-Poroia/Af19/1999—Greece	Slovenia 3970/87c	94	65.9									X
Rift Valley fever virus MP-12
Egypt—Sharqiya	ZH548—Egyptc	99	97.3						X
Kyasanur Forest disease virus
KFD P 9605—India	Alkhurma virusc	92	73.9	X
Tick-borne encephalitis virus
Neudoerfl—Austria	Omsk haemorrhagic fever virus Balanguld	82	41.7			X				X
Reston ebolavirus—Pennsylvania	Restonc	100	98.6		X
Zaire ebolavirus Mayinga—1976	Zaire, 1995c	100	94.8							X
	Gabon, 2001c	99	91.3								X
Marburg marburgvirus Popp	Popp, Uganda, 1967c	100	98.4				X
	Musoke-Kenya,1880c	95	98.2					X
Nipah virus UMMC1—Malaysia	Malaysiac	100	99.6		X							X
Hendra virus—Australia	Australiac	100	99.4	X									X

^aCall rate for the detection of the strain/isolate on the microarray.

^bMixtures of RNA extracted from different cell cultures infected with different viruses. For each mix, the viral RNA present is identified by a X.

^cDetection in infected cell supernatants.

^dDetection of synthetic sequence.

NA, sequence not available.