Table 2.
Likelihoods of GAGE assemblies of S. aureus
| Assembler | Likelihood | Number of reads mapped | Coverage (%) | Scaffold N50 (kb) | Contig N50 (kb) |
|---|---|---|---|---|---|
| ABySS | -23.34 × 107 | 1236230 | 99.74a | 34 | 29.2 |
| ALLPATHS-LG | -24.53 × 107 | 1220328 | 99.38 | 1092 | 96.7 |
| Bambus2 | -23.76 × 107 | 1200527 | 98.68 | 1084 | 50.2 |
| MSR-CA | -25.85 × 107 | 1192001 | 98.70 | 2412 | 59.2 |
| SGA | -26.61 × 107 | 1018936 | 98.09 | 208 | 4.0 |
| SOAPdenovo | -23.55 × 107 | 1212384 | 99.62 | 332 | 288.2 |
| Velvet | -23.28 × 107 | 1203907 | 99.21 | 762 | 48.4 |
| Reference | -22.38 × 107 | 1268718 | - | - | - |
a Value reported in original paper is 98.63.