TABLE 1 .
General features of the 82 P. acnes genomes
| Genome no. | Strain name | Origin | Ribotype | recA type | Sequencing method |
Genome size (Mb) |
GC (%) | No. of ORFs |
|---|---|---|---|---|---|---|---|---|
| 1 | HL001PA1 | Skin | 2 | II | Illumina | 2.49 | 60.0 | 2,661 |
| 2 | HL002PA1 | Skin | 3 | IB | Illumina | 2.48 | 60.1 | 2,549 |
| 3 | HL002PA2 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,594 |
| 4 | HL002PA3 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,565 |
| 5 | HL005PA1 | Skin | 4 | IA | Illumina | 2.53 | 60.2 | 2,724 |
| 6 | HL005PA2 | Skin | 1 | IA | Illumina | 2.48 | 60.0 | 2,645 |
| 7 | HL005PA3 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,579 |
| 8 | HL005PA4 | Skin | 3 | IB | Illumina | 2.47 | 60.0 | 2,607 |
| 9 | HL007PA1 | Skin | 4 | IA | Illumina | 2.53 | 60.2 | 2,691 |
| 10 | HL013PA1 | Skin | 3 | IB | Illumina | 2.48 | 60.0 | 2,618 |
| 11 | HL013PA2 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,588 |
| 12 | HL020PA1 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,554 |
| 13 | HL025PA1 | Skin | 1 | IB | Illumina | 2.54 | 60.1 | 2,581 |
| 14 | HL025PA2 | Skin | 3 | IB | Illumina | 2.48 | 60.0 | 2,616 |
| 15 | HL027PA1 | Skin | 3 | IB | Illumina | 2.53 | 60.1 | 2,711 |
| 16 | HL027PA2 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,629 |
| 17 | HL030PA1 | Skin | 1 | IB | Illumina | 2.54 | 60.0 | 2,662 |
| 18 | HL030PA2 | Skin | 3 | IB | Illumina | 2.51 | 60.1 | 2,647 |
| 19 | HL036PA1 | Skin | 532 | IA | Illumina | 2.48 | 60.1 | 2,575 |
| 20 | HL036PA2 | Skin | 532 | IA | Illumina | 2.48 | 60.1 | 2,565 |
| 21 | HL036PA3 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,601 |
| 22 | HL037PA1 | Skin | 3 | IB | Illumina | 2.48 | 60.1 | 2,617 |
| 23 | HL038PA1 | Skin | 4 | IA | Illumina | 2.54 | 60.2 | 2,663 |
| 24 | HL042PA3 | Skin | 6 | II | Roche/454 | 2.53 | 60.1 | 2,610 |
| 25 | HL043PA1 | Skin | 5 | IA | Illumina | 2.53 | 60.2 | 2,698 |
| 26 | HL043PA2 | Skin | 5 | IA | Illumina | 2.53 | 60.2 | 2,688 |
| 27 | HL045PA1 | Skin | 4 | IA | Illumina | 2.53 | 60.2 | 2,692 |
| 28 | HL046PA1 | Skin | 3 | IB | Illumina | 2.48 | 60.0 | 2,599 |
| 29 | HL046PA2 | Skin | 1 | IA | Illumina | 2.53 | 60.1 | 2,692 |
| 30 | HL050PA1 | Skin | 3 | IB | Illumina | 2.48 | 60.0 | 2,652 |
| 31 | HL050PA2 | Skin | 1 | II | Illumina | 2.46 | 60.1 | 2,581 |
| 32 | HL050PA3 | Skin | 3 | IB | Illumina | 2.48 | 60.0 | 2,558 |
| 33 | HL053PA1 | Skin | 4 | IA | Illumina | 2.53 | 60.2 | 2,632 |
| 34 | HL053PA2 | Skin | 8 | IB | Illumina | 2.51 | 60.1 | 2,664 |
| 35 | HL056PA1 | Skin | 4 | IA | Illumina | 2.48 | 60.1 | 2,581 |
| 36 | HL059PA1 | Skin | 16 | IB | Illumina | 2.48 | 60.1 | 2,570 |
| 37 | HL059PA2 | Skin | 16 | IB | Illumina | 2.48 | 60.0 | 2,535 |
| 38 | HL060PA1 | Skin | 2 | II | Illumina | 2.48 | 60.1 | 2,601 |
| 39 | HL063PA1 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,520 |
| 40 | HL063PA2 | Skin | 3 | IB | Illumina | 2.53 | 60.0 | 2,669 |
| 41 | HL067PA1 | Skin | 3 | IB | Illumina | 2.53 | 60.1 | 2,633 |
| 42 | HL072PA1 | Skin | 5 | IA | Illumina | 2.53 | 60.1 | 2,594 |
| 43 | HL072PA2 | Skin | 5 | IA | Illumina | 2.53 | 60.1 | 2,672 |
| 44 | HL074PA1 | Skin | 4 | IA | Illumina | 2.53 | 60.2 | 2,723 |
| 45 | HL078PA1 | Skin | 1 | IA | Illumina | 2.58 | 60.1 | 2,785 |
| 46 | HL082PA1 | Skin | 8 | IB | Illumina | 2.50 | 60.1 | 2,648 |
| 47 | HL082PA2 | Skin | 2 | II | Illumina | 2.51 | 60.0 | 2,644 |
| 48 | HL083PA1 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,575 |
| 49 | HL083PA2 | Skin | 3 | IB | Illumina | 2.48 | 60.0 | 2,633 |
| 50 | HL086PA1 | Skin | 8 | IB | Illumina | 2.53 | 60.1 | 2,610 |
| 51 | HL087PA1 | Skin | 3 | IB | Illumina | 2.48 | 60.1 | 2,584 |
| 52 | HL087PA2 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,572 |
| 53 | HL087PA3 | Skin | 3 | IB | Illumina | 2.52 | 60.1 | 2,619 |
| 54 | HL092PA1 | Skin | 8 | IB | Illumina | 2.50 | 60.1 | 2,590 |
| 55 | HL096PA1 | Skin | 5 | IA | Roche/454 | 2.49 | 60.0 | 2,393 |
| 56 | HL096PA2 | Skin | 5 | IA | Illumina | 2.56 | 60.1 | 2,638 |
| 57 | HL096PA3 | Skin | 1 | IA | Illumina | 2.56 | 60.0 | 2,651 |
| 58 | HL097PA1 | Skin | 5 | IC | Illumina | 2.52 | 60.2 | 2,617 |
| 59 | HL099PA1 | Skin | 4 | IA | Illumina | 2.58 | 60.1 | 2,735 |
| 60 | HL100PA1 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,562 |
| 61 | HL103PA1 | Skin | 2 | II | Illumina | 2.48 | 60.1 | 2,546 |
| 62 | HL106PA1 | Skin | 2 | II | Illumina | 2.48 | 60.1 | 2,533 |
| 63 | HL106PA2 | Skin | 1 | IA | Illumina | 2.48 | 60.1 | 2,567 |
| 64 | HL110PA1 | Skin | 8 | IB | Illumina | 2.51 | 60.1 | 2,667 |
| 65 | HL110PA2 | Skin | 8 | IB | Illumina | 2.50 | 60.1 | 2,614 |
| 66 | HL110PA3 | Skin | 6 | II | Illumina | 2.54 | 60.1 | 2,806 |
| 67 | HL110PA4 | Skin | 6 | II | Illumina | 2.54 | 60.1 | 2,724 |
| 68 | HL201PA1 | Refractory endodontic lesion |
Not assigned | III | Illumina | 2.48 | 60.1 | 2,629 |
| 69 | HL202PA1 | Refractory endodontic lesion |
6 | II | Illumina | 2.56 | 60.0 | 2,821 |
| 70 | KPA171202 | Plate | 1 | IB | Sanger | 2.56 | 60.0 | 2,297 |
| 71 | J139 | Skin | 2 | II | Roche/454 | 2.48 | 60.0 | 2,364 |
| 72 | J165 | Skin | 1 | IA | Roche/454 | 2.50 | 60.0 | 2,403 |
| 73 | SK137 | Skin | 1 | IA | Roche/454 | 2.50 | 60.0 | 2,352 |
| 74 | SK187 | Skin | 3 | IB | Roche/454 | 2.51 | 59.0 | 2,381 |
| 75 | SK182 | Skin | 1 | IA | Roche/454 | 2.48 | 60.0 | 2,338 |
| 76 | 266 | Pleuropulmonary infection |
1 | IA | Roche/454 | 2.50 | 60.0 | 2,412 |
| 77 | 6609 | Skin | 1 | IB | Solid | 2.56 | 60.0 | 2,358 |
| 78 | ATCC 11828 | Abscess | 2 | II | Solid | 2.49 | 60.0 | 2,260 |
| 79 | P.acn17 | Corneal scrape | 3 | IB | Solid | 2.52 | 60.0 | 2,266 |
| 80 | P.acn31 | Aqueous humor | 3 | IB | Solid | 2.50 | 60.0 | 2,247 |
| 81 | P.acn33 | Aqueous humor | 3 | IB | Solid | 2.49 | 60.0 | 2,236 |
| 82 | PRP-38 | Skin | 5 | IC | Solid | 2.51 | 60.0 | 2,233 |