Table 1.
Summary statistics among seven highest performing assembly strategies
| Assembly strategies | Percent reference coverage (bp) | Percent reference genes assembled to >200 bp | Percent reference genes assembled to ≥80% | Percent chimeric | Redundancy |
|---|---|---|---|---|---|
| Oases filter1-cap3-blast |
26.50% |
45.70% |
10.52% |
0.96% |
2.42 |
| Oases filter1&3-cap3-blast |
27.67% |
45.65% |
11.73% |
1.11% |
2.41 |
| SOAPdenovo-Trans k=21-cap3-blast |
32.75% |
45.62% |
16.20% |
2.21% |
1.78 |
| SOAPdenovo-Trans contigs cap3-blast |
30.64% |
46.62% |
14.34% |
1.06% |
2.19 |
| Trans-ABySS MK-cap3-blast |
28.34% |
42.93% |
13.01% |
1.39% |
2.16 |
| Trinity blast |
26.22% |
47.06% |
9.58% |
1.69% |
3.11 |
| Trinity pickH-cap-blast | 23.19% | 45.38% | 8.35% | 0.92% | 1.89 |
The best score for each column, measured as highest in reference coverage and lowest in chimera rate and redundancy, is in bold.