Table 7.
Expression profile of the protein-coding genes in the perennial ryegrass mitochondrial genome
| Genes | RNA-seq read counts | Coding sequences (kbp) | Relative expression |
|---|---|---|---|
|
nad1 |
2,392 |
0.975 |
2,453 |
|
nad2 |
4,573 |
1.464 |
3,124 |
|
nad3 |
2,816 |
0.354 |
7,955 |
|
nad4 |
5,967 |
1.485 |
4,018 |
|
nad4L |
1,391 |
0.312 |
4,458 |
|
nad5 |
8,251 |
2.010 |
4,105 |
|
nad6 |
2,426 |
0.942 |
2,575 |
|
nad7-1 |
2,766 |
1.182 |
2,340 |
|
nad7-2 |
2,766 |
1.182 |
2,340 |
|
nad9 |
6,974 |
0.570 |
12,236 |
|
cob |
12,226 |
1.191 |
10,265 |
|
cox1 |
17,574 |
1.986 |
8,849 |
|
cox2 |
6,083 |
0.780 |
7,799 |
|
cox3 |
9,713 |
0.840 |
11,564 |
|
atp1 |
15,214 |
1.527 |
9,963 |
|
atp4 |
2,388 |
0.585 |
4,082 |
|
atp6 |
4,633 |
0.711 |
6,516 |
|
atp8 |
3,454 |
0.465 |
7,429 |
|
atp9 |
5,361 |
0.222 |
24,150 |
|
ccmB |
235 |
0.648 |
363 |
|
ccmC |
1,327 |
0.720 |
1,843 |
|
ccmFC |
1,702 |
1.431 |
1,190 |
|
ccmFN |
3,739 |
1.767 |
2,116 |
|
rps1 |
1,645 |
0.633 |
2,599 |
|
rps2 |
1,635 |
1.461 |
1,119 |
|
rps3 |
9,172 |
1.647 |
5,569 |
|
rps4 |
503 |
1.032 |
487 |
|
rps4-p |
424 |
1.029 |
412 |
|
rps7-1 |
205 |
0.444 |
461 |
|
rps7-2 |
205 |
0.444 |
461 |
|
rps12 |
5,072 |
0.375 |
13,526 |
|
rps13 |
388 |
0.348 |
1,115 |
|
rps14-1 |
7 |
0.156 |
42 |
|
rps14-2 |
7 |
0.156 |
42 |
|
rpl5-1 |
52 |
0.549 |
96 |
|
rpl5-2 |
52 |
0.549 |
96 |
|
rpl16 |
4,963 |
0.555 |
8,942 |
|
matR |
416 |
1.974 |
211 |
|
mttB |
698 |
0.813 |
859 |
| Total | 149,414 | 35.514 |
Gene name, RNA-seq read counts, protein-coding gene length in kbp, and the relative expression.