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. Author manuscript; available in PMC: 2013 May 26.
Published in final edited form as: J Phys Chem B. 2010 Oct 25;114(46):15092–15105. doi: 10.1021/jp108452y

Table 2.

Relative (kcal mol−1) and total (Hartree) energies of selected protonated forms of [RGD + H]+ and the TSs of the various fragmentation pathways. Zero-point energy corrected total energies, Etot+ ZPE are reported at the B3LYP/6-31G+(d,p) theoretical level. The relative energies, Erel (corrected for zero-point energy calculated from B3LYP/6-31G(d) vibrational frequencies) were determined with respect to the global minimum on the PES of [RGD + H]+. Relative Gibbs free energies (ΔG298) at 298K are in kcal/mol, relative entropies (ΔS298) are in cal/mol K.

Etotal / H Etotal + ZPE/ H ΔEel+ ZPE/
kcal mol−1
ΔG298/
kcal mol−1
ΔS298/ cal
K−1 mol−1
I −1250.988180 −1250.592653 0.0 0.0 0.0
II −1250.966723 −1250.572800 12.5 9.6 11.4
III −1250.921509 −1250.528441 40.3 39.9 0.9
IV −1250.966245 −1250.572540 12.6 11.7 3.7
V −1250.947235 −1250.555101 23.6 21.3 10.1
VI −1250.959349 −1250.565912 16.8 15.7 4.2
VII −1250.964832 −1250.571924 13.0 11.4 6.6
VIII −1250.964982 −1250.570174 14.1 13.9 0.6
IX −1250.958198 −1250.564529 17.7 16.7 4.2
X −1250.957930 −1250.565262 17.2 16.3 3.9
XI −1250.972419 −1250.579452 8.3 7.0 5.4
XII −1250.905148 −1250.514040 49.3 48.2 4.5
XIII −1250.920132 −1250.528495 40.3 39.3 3.9
XVI −1250.918858 −1250.526632 41.4 41.8 −1.5
XVII −1250.933179 −1250.539547 33.3 32.2 4.3
XVIII −1250.927273 −1250.534842 36.3 36.3 0.2
XIX −1250.921550 −1250.529957 39.3 39.0 2.1
XX −1250.916450 −1250.523431 43.4 42.7 4.3
XXI −1250.909141 −1250.514981 48.7 48.3 1.0
XXII −1250.940593 −1250.546724 28.8 28.6 0.5
XXIII −1250.911452 −1250.523030 43.7 42.0 9.7
XXIV −1250.917386 −1250.524725 42.6 40.7 7.1
XXV −1250.914905 −1250.525000 42.5 41.0 8.0
XXVI −1250.918862 −1250.527732 40.7 40.1 2.1
XXVII −1250.899163 −1250.512393 50.4 47.7 13.9
XXVIII −1250.913952 −1250.521069 44.9 42.8 8.3