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Sequencing metrics
| Platform | Roche 454 GS junior | Ion torrent |
|---|---|---|
| Amplicons | 27 | 95 |
| Average depth (per bp) | 63.9 | 97.5 |
| Bases within 2-fold average depth (%) | 99.75 | 94.51 |
| Based called (%) | 99.94 | 95.80 |
| Bases called >Q30 (%) | 99.82 | 94.78 |
| Duplicate call consistency (%) | 100 | 99.99 |
| Duplicate variant consistency (%) | 100 | 98.77 |
| 1000 genomes concordance (%) | 99.70 | 97.70 |
