Table 4.
Method | Qtot | P[D] | S[D] | P[N] | S[N] | MCC | AUC |
---|---|---|---|---|---|---|---|
PhD-SNP | 0.70 | 0.77 | 0.75 | 0.57 | 0.61 | 0.35 | 0.74 |
S3D-PROF | 0.80 | 0.80 | 0.84 | 0.80 | 0.76 | 0.60 | 0.87 |
SNPs&GO | 0.79 | 0.84 | 0.83 | 0.71 | 0.71 | 0.54 | 0.85 |
SNPs&GO3d | 0.83 | 0.84 | 0.86 | 0.84 | 0.80 | 0.67 | 0.91 |
D=disease related, N=neutral. For index definition see "Measures of performance