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. Author manuscript; available in PMC: 2013 May 28.
Published in final edited form as: Melanoma Res. 2009 Apr;19(2):80–86. doi: 10.1097/CMR.0b013e328322fc45

Table 1.

Association analyses of the polymorphisms genotyped in 1560 familial melanoma cases and 1650 controls.

Minor Allele Frequency Allelic Association
dbSNP ID Position Gene Role Alleles Case Control X2 P OR (95% CI)
rs10819693 chr9:101577981 NR4A3 Upstream C<A 0.209 0.214 0.223 0.637 0.97 (0.86–1.10)
rs4743365 chr9:101613594 NR4A3 Upstream C<T 0.123 0.129 0.537 0.464 0.95 (0.82–1.10)
rs13295822 chr9:101615501 NR4A3 Promoter A<G 0.170 0.168 0.080 0.778 1.02 (0.89–1.16)
rs2900223 chr9:101636142 NR4A3 3' UTR C<T 0.235 0.247 1.060 0.303 0.94 (0.84–1.06)
rs2416879 chr9:101653493 NR4A3 Intron G<A 0.107 0.109 0.101 0.751 0.97 (0.83–1.14)
rs7023690 chr9:101663149 NR4A3 Intron C<A 0.440 0.443 0.025 0.874 0.99 (0.90–1.10)
rs2416878 chr9:101672056 NR4A3 Downstream A<G 0.398 0.399 0.000 0.993 1.10 (0.90–1.11)
rs12554558 chr9:101679119 NR4A3 Downstream C<T 0.083 0.090 1.139 0.286 0.91 (0.76–1.08)
rs10988912 chr9:101680853 STX17 Upstream G<C 0.332 0.338 0.176 0.675 0.98 (0.88–1.09)
rs7024182 chr9:101694268 STX17 Upstream T<C 0.343 0.349 0.187 0.665 0.98 (0.88–1.08)
rs4742776 chr9:101702452 STX17 Promoter T<C 0.358 0.358 0.000 0.987 1.00 (0.90–1.11)
rs2416938 chr9:101720516 STX17 Intron A<G 0.310 0.320 0.637 0.425 0.96 (0.86–1.07)
rs10760704 chr9:101748385 STX17 Intron G<A 0.325 0.335 0.751 0.386 0.95 (0.86–1.06)
rs7038506 chr9:101749953 STX17 Intron T<C 0.324 0.334 0.852 0.356 0.95 (0.86–1.06)
rs7865257 chr9:101755787 STX17 Intron G<A 0.365 0.343 3.430 0.064 1.10 (0.99–1.22)
rs10116142 chr9:101767497 STX17 Intron G<C 0.374 0.377 0.064 0.800 0.99 (0.89–1.09)
rs3824510 chr9:101854271 TXNDC4 Intron T<A 0.084 0.083 0.019 0.890 1.01 (0.85–1.21)
rs16918878 chr9:101886451 TXNDC4 Intron T<C 0.296 0.300 0.128 0.720 0.98 (0.88–1.09)
rs1361668 chr9:101896127 TXNDC4 Intron G<C 0.461 0.474 1.231 0.267 0.95 (0.86–1.04)
rs7024375 chr9:101901434 TXNDC4 Promoter G<T 0.166 0.171 0.424 0.515 0.96 (0.84–1.09)
rs12552646 chr9:101908296 TXNDC4 Promoter T<C 0.445 0.458 1.219 0.270 0.95 (0.86–1.04)
rs12346672 chr9:101908590 TXNDC4 Promoter G<A 0.310 0.287 3.911 0.048 1.12 (1.00–1.24)
rs1535667 chr9:101934076 INVS Intron T<C 0.471 0.486 1.585 0.208 0.94 (0.85–1.04)
rs7020636 chr9:101998420 INVS Intron G<A 0.302 0.306 0.115 0.734 0.98 (0.88–1.09)
rs4273907 chr9:102017116 INVS Intron T<C 0.085 0.083 0.022 0.882 1.01 (0.85–1.21)
rs16919019 chr9:102051408 INVS Intron G<C 0.092 0.107 3.365 0.067 0.86 (0.73–1.01)