Table 1. Pneumococcal isolates selected for whole genome sequencing.
| Identifier | Year | Specimen type | Clinical Status and Outcome | ST |
| SOT0802M | 2008 | Blood | COPD exacerbation: Recovered | ST1692 |
| SOT0954Q | 2009 | Blood | Pneumonia: Fatal | ST1692 |
| SOT1058S | 2010 | CSF | Meningitis: Fatal | ST1692 |
| SOT1060N | 2010 | Blood | Sepsis: Fatal | ST1150 |
| SOT0081 | 2006/7 | NP swab | Carriage | ST1692 |
| SOT0113 | 2006/7 | NP swab | Carriage | ST65 |
| SOT0237 | 2006/7 | NP swab | Carriage | ST1714 |
| SOT2029 | 2007/8 | NP swab | Carriage | ST3460 |
| SOT2073 | 2007/8 | NP swab | Carriage | ST1692 |
| SOT2074 | 2007/8 | NP swab | Carriage | ST1692 |
| SOT2105 | 2007/8 | NP swab | Carriage | ST1692 |
| SOT2300 | 2007/8 | NP swab | Carriage | ST1862 |
| SOT2371 | 2007/8 | NP swab | Carriage | ST395 |
| SOT3022 | 2008/9 | NP swab | Carriage | ST1692 |
| SOT3050 | 2008/9 | NP swab | Carriage | ST1600 |
| SOT3055 | 2008/9 | NP swab | Carriage | ST1692 |
| SOT3060 | 2008/9 | NP swab | Carriage | ST1150 |
| SOT3074 | 2008/9 | NP swab | Carriage | ST1714 |
| SOT3088 | 2008/9 | NP swab | Carriage | ST398 |
Abbreviations: CSF: cerebrospinal fluid; NP: nasopharyngeal.