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. Author manuscript; available in PMC: 2014 Jun 1.
Published in final edited form as: Funct Integr Genomics. 2013 Feb 19;13(2):207–216. doi: 10.1007/s10142-013-0313-8

Figure 2.

Figure 2

Alignment of predicted targets in UTRs for 21-nt miR1884b variants and putative MITE sequence ORSgTEMT01600413. 100 nt upstream and downstream sequences flanking miRNA complementary sites in targets' 5' or 3' UTRs were extracted from rice reference genome and aligned with ClustalW (Larkin et al. 2007). The consensus nucleotides (> 90% identity) are indicated by boxes. miRNA complementary target sites are underlined. The reverse complement sequences of 5' half for the MITE ORSgTEMT01600413 is shown. 50 nt upstream genomic sequences are added in order to have equal length with miR1884b targets.