Table 1.
Lattice | F432 | F432 | F432 | F432 | F432 | F432 | P21212 |
BeF3−(−/+) | + | + | + | − | − | − | + |
pH | 10.5 | 8.4 | 7.5 | 10.5 | 8.4 | 7.5 | 6.0 |
Data collection | |||||||
Wavelength (Å) | 0.979 | 1.072 | 1.072 | 0.979 | 0.979 | 0.979 | 1.072 |
Cell a= | 198.7 | 197.8 | 197.9 | 198.8 | 198.3 | 197.1 | 54.2 |
(Å) b= | 198.7 | 197.8 | 197.9 | 198.8 | 198.3 | 197.1 | 54.2 |
c= | 198.7 | 197.8 | 197.9 | 198.8 | 198.3 | 197.1 | 54.2 |
α=β=γ = | 90° | 90° | 90° | 90° | 90° | 90° | 90° |
Resolutiona (Å) | 2.0 | 2.0 | 2.0 | 2.1 | 2.2 | 2.0 | 2.0 |
Rsym b | 0.058/ | 0.068/ | 0.071/ | 0.100/ | 0.097/ | 0.078/ | 0.052/ |
(0.236) | (0.377) | (0.261) | (0.358) | (0.331) | (0.251) | (0.080) | |
Completeness (%) | 99.9 / | 99.9/ | 96.9 / | 99.9 / | 99.7/ | 97.1/ | 99.4 |
(99.5) | (100.0) | (98.5) | (98.7) | (100.0) | (97.0) | (99.3) | |
I/σI | 34.9/ | 35.7/ | 35.5/ | 21.3/ | 22.8/ | 22.0/ | 38.6/ |
(7.1) | (7.0) | (8.2) | (6.3) | (8.0) | (6.6) | (21.5) | |
Refinement | |||||||
Resolutiona (Å) | 2.0 | 2.0 | 2.0 | 2.1 | 2.3 | 2.0 | 2.0 |
Rworking c | 0.210 | 0.220 | 0.212 | 0.197 | 0.193 | 0.200 | 0.186 |
Rfree d | 0.224 | 0.246 | 0.228 | 0.207 | 0.220 | 0.213 | 0.232 |
No. of reflections | 20,589 | 20,593 | 20,015 | 17,947 | 13,445 | 19,511 | 7,864 |
No. of protein atoms | 1058 | 1067 | 1090 | 1083 | 1090 | 1078 | 1097 |
Small moleculese | |||||||
Mg2+ | 1 | 1 | 1 | − | − | − | 1 |
BeF3− | 1 | 1 | 1 | − | − | − | 1 |
Water | 81 | 53 | 89 | 80 | 87 | 86 | 90 |
CAPS | 2 | − | − | 2 | − | − | − |
Tris | − | 1 | − | − | 1 | − | − |
Sulfate | 1 | 1 | 1 | 1 | 1 | 1 | − |
Glycerol | − | 1 | − | − | 1 | − | − |
Acetyl group | − | − | − | − | − | − | 1 |
r.m.s.d. values from ideality | |||||||
Bond lengths (Å) | 0.010 | 0.013 | 0.011 | 0.011 | 0.013 | 0.011 | 0.008 |
Bond angles (°) | 1.250 | 1.281 | 1.220 | 1.184 | 1.217 | 1.409 | 1.116 |
B-valuef (Å2) | 25.60 | 28.76 | 24.13 | 20.04 | 21.28 | 27.45 | 10.92 |
Values corresponding to highest resolution shells are shown in parentheses.
High resolution limits for data collection and refinement are indicated.
, where Iobs = observed integrated intensity and Iavg = average integrated intensity from multiple measurements.
, where Fobs and Fcalc are the observed and calculated structure factor amplitudes for hkl indices, respectively.
Rfree is identical to Rworking but is calculated from 10% of the reflections set aside as a disjoint set prior to refinement.
Number of small molecules in each case are indicated.
Overall B-value includes all atoms in a given model.