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. 2013 May 29;8(5):e64621. doi: 10.1371/journal.pone.0064621

Table 5. Summary of Pfam domains.

Accession ID Description Occurrence
Protein domains in the reference transcriptome
PF00069.19 Pkinase Protein kinase domain 507
PF00076.16 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237
PF01535.14 PPR pentatricopeptide repeat 220
PF00400.26 WD40 WD domain, G-beta repeat 203
PF07714.1 Pkinase_Tyr Protein tyrosine kinase 199
PF07727.8 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 190
PF00067.16 p450 Cytochrome P450 148
PF12854.1 PPR_1 Pentatricopeptide repeat 142
PF00665.20 rve Integrase core domain 93
PF00004.23 AAA ATPase family associated with various cellular activities (AAA) 90
PF00270.23 DEAD DEAD/DEAH box helicase 90
PF00271.25 Helicase_C Helicase conserved C-terminal domain 80
PF00153.21 Mito_carr Mitochondrial carrier protein 77
PF00481.15 PP2C Protein phosphatase 2C 75
PF00036.26 efhand EF hand 74
Other domains 18 055
Protein domains in candidate genes for hydrocarbon biosynthesis
PF00501 AMP-binding AMP-binding enzyme 62
PF01061 ABC2_membrane ABC-2 type transporter 43
PF00106 adh_short short chain dehydrogenase 35
PF00378 ECH Enoyl-CoA hydratase/isomerase family 23
PF01553 Acyltransferase Acyltransferase 13
PF03405.8 FA_desaturase_2 Fatty acid desaturase 13
PF08392.1 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein 13
PF07993 NAD_binding_4 Male sterility protein 13
Other domains 60
Protein domains in candidate genes for anthocyanin biosynthesis
PF03171 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily 63
PF00201 UDPGT UDP-glucoronosyl and UDP-glucosyl transferase 19
PF02797 Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain 10
PF00195 Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain 7
PF02431 Chalcone Chalcone-flavanone isomerase 4

Highly abundant protein domains in the Ophrys reference transcriptome and among candidate genes for hydrocarbon and anthocyanin biosynthesis. ‘Occurrence’ lists the number of transcripts matching a given domain.