Table 1. Summary of template-based modeling and ab initio modeling on 21 known E. coli proteins with length < 150 residues.

				TM-score of the best in top 5 models
UniProt Entry	PDB ID	Compact	Length	Template	Modeller	QUARK	ModRefiner	Estimated
ARIR_ECOLI	2oxlA	YES	88	0.415	0.439	0.614	0.614	0.614
EMRE_ECOLI	3b61A	NO	110	0.360	0.362	0.314	0.319	0.605
EUTN_ECOLI	2z9hA	YES	95	0.196	0.203	0.255	0.259	0.409
FLHD_ECOLI	2avuB	NO	116	0.279	0.280	0.295	0.302	0.427
GCSH_ECOLI	3a7lA	YES	129	0.406	0.439	0.280	0.269	0.351
ISCX_ECOLI	1uj8A	YES	66	0.331	0.348	0.438	0.464	0.461
METJ_ECOLI	1cmaA	NO	105	0.185	0.220	0.254	0.247	0.397
MQSR_ECOLI	3hi2B	YES	98	0.243	0.250	0.424	0.449	0.381
PTHP_ECOLI	1pohA	YES	85	0.349	0.437	0.568	0.570	0.440
RL14_ECOLI	1vt2K	YES	123	0.203	0.215	0.380	0.392	0.388
RL17_ECOLI	1vs6N	NO	127	0.198	0.236	0.256	0.255	0.468
RL20_ECOLI	1vs6Q	YES	118	0.236	0.363	0.420	0.412	0.435
RL21_ECOLI	1vs6R	NO	103	0.184	0.187	0.204	0.209	0.389
RL27_ECOLI	1vs6W	NO	85	0.138	0.179	0.170	0.177	0.348
RS16_ECOLI	1vs5P	YES	82	0.210	0.241	0.336	0.336	0.377
RUSA_ECOLI	2h8eA	YES	120	0.330	0.374	0.306	0.307	0.378
YBCO_ECOLI	3g27A	YES	96	0.330	0.328	0.416	0.407	0.356
YEEU_ECOLI	2h28A	YES	122	0.327	0.329	0.363	0.378	0.344
YFJZ_ECOLI	2ea9A	YES	105	0.313	0.320	0.393	0.398	0.359
YHBY_ECOLI	1ln4A	YES	97	0.260	0.436	0.488	0.515	0.453
ZAPB_ECOLI	2jeeA	NO	81	0.711	0.490	0.512	0.523	0.786
Average			102	0.295	0.318	0.366	0.371	0.436