Table 3.
Identification of viral sequences (divided by viral family) according to sample type, assembler and identification algorithm.
| Sequence origin |
Related viral family |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Herpes | Papilloma | Adeno | Pox | Polyoma | Picorna | Retro | Parvo | Total (%) | ||
| Assembly algorithm | ABySS | 188 | 111 | 18 | 12 | 3 | 74 | 3 | 409 (30%) | |
| MetaCortex | 113 | 94 | 29 | 9 | 1 | 69 | 315 (23%) | |||
| Meta-IDBA | 27 | 14 | 2 | 4 | 2 | 49 (4%) | ||||
| Velvet | 211 | 189 | 21 | 15 | 1 | 3 | 145 | 5 | 590 (43%) | |
| Sample | Lung | 8 | 1 | 18 | 1 | 235 | 263 (19%) | |||
| Throat sw. | 531 | 405 | 18 | 38 | 1 | 53 | 8 | 1054 (77%) | ||
| Urine | 2 | 32 | 6 | 4 | 2 | 46 (4%) | ||||
| ID algorithm | BLASTn | 14 | 9 | 36 | 5 | 4 | 6 | 1 | 75 (6%) | |
| BLASTx | 454 | 343 | 22 | 30 | 1 | 3 | 258 | 4 | 1115 (82%) | |
| tBLASTx | 71 | 56 | 10 | 3 | 28 | 5 | 173 (13%) | |||
| Total (% of total) | 539 (40%) | 408 (30%) | 68 (5%) | 38 (3%) | 1 (0%) | 7 (0%) | 292 (21%) | 10 (1%) | 1363 (100%) | |