Table 1. Strains, plasmids and primers used.
Strains | Relevant phenotype or genotype | Reference or Source |
B. breve UCC2003 | Infant isolate | [37] |
B. breve NCFB2258 | Infant isolate | NCFB |
E. coli EC101 | Cloning host, repA+, Kanr | [59] |
Plasmids | ||
pMOD2 | Source of tn5 terminal ends, AmpR | Epicentre Biotechnology |
pMOD2-TetW | TetR derivative of pMOD2 | This study |
Primers | Sequence | |
TetW-Fw | 5′-CGCTAGTCTAGAGCTCATGTACGGTAAGGAAG-3′ | This study |
TetW-Rev | 5′CGCTAGGCATGC AAAACCCTCGGTCGGTCTGACCGGGGGTTTTGATTACATTACCTTCTGAAACATATGGC-3′ | This study |
pMOD<MCS>Fw | 5′-ATTCAGGCTGCGCAACTGT-3′ | Epicentre Biotechnology |
pMOD<MCS>Rev | 5′-GTCAGTGAGCGAGGAAGCGGAAG-3′ | Epicentre Biotechnology |
i-PCR-Fw | 5′-GCATACCGTACTGATCTG-3′ | This study |
i-PCR-Rev | 5′-CAATCATACCGGCTTCC-3′ | This study |
pMOD-fw-seq | 5′-GCCAACGACTACGCACTAGCC-3′ | Epicentre Biotechnology |
pMOD-rev-seq | 5′-GAGCCAATATGCGAGAACACC-3′ | Epicentre Biotechnology |
Restriction sites are underlined and a rho-transcriptional terminator sequence is highlighted in bold. NCFB, National Collection of Food Bacteria.