Table 1.
Additional significant SNPs or positive results identified by eQTL weighting methods after accounting for linkage disequilibrium in the MAGICS analysis.
| Chr | SNP | Gene | p-value | Qg | Qb | Method |
|---|---|---|---|---|---|---|
| 17 | rs1877031 | STARD3 | 4.32 × 10−6 | 1.54 × 10−6 | 1.17 × 10−6 | BH |
| 17 | rs931992 | TCAP, STARD3 | 5.61 × 10−6 | 1.96 × 10−6 | 1.52 × 10−6 | BH |
| 17 | rs1565922 | PGAP3 | 7.28 × 10−6 | 2.55 × 10−6 | 1.97 × 10−6 | BH |
| 17 | rs2941504 | PGAP3 | 7.64 × 10−6 | 2.68 × 10−6 | 2.06 × 10−6 | BH |
| 10 | rs11191325 | SUFU | 8.49 × 10−6 | 3.37 × 10−6 | 2.29 × 10−6 | BH |
Qg and Qb are the eQTL weighted p-values based on the general weight and the binary weight, respectively. Using both weights result in the same set of SNPs.