Table 1.

Effect of end trimming on read alignment to genome

5′ Trim (bp)	3′ Trim (bp)	% reads mapped to bovine genome (BTAU4.0)
		BL 1	BL 2	BL 3	BL 4	BL 5	Mean ± SEM
0	0	67.9	70.1	70.0	67.7	70.0	69.1 ± 0.5
2	2	80.7	82.8	82.5	81.7	82.5	82.0 ± 0.4
0	4	69.7	72.6	71.9	69.7	72.0	71.2 ± 0.6
0	9	72.0	74.6	73.9	71.8	74.0	73.3 ± 0.6
4	0	83.4	84.2	85.0	84.3	84.9	84.4 ± 0.3
9	0	88.0	89.4	89.6	88.7	89.3	89.0 ± 0.3