Table 1.
Genome overview after automated annotation in MAGE
| Characteristics |
STM 2683 |
STM 4661 |
||
|---|---|---|---|---|
| Chromosome | Plasmid | Chromosome | Plasmid | |
|
Sequence length (bases) |
6,020,204 |
233,929 |
6,304,314 |
251,782 |
|
GC (%) |
62.53 |
60.53 |
62.44 |
60.53 |
|
Number of Scaffolds |
3 |
2 |
1 |
1 |
|
Number of Contigs |
171 |
20 |
83 |
6 |
|
Nosferatu Repeated Regions (%) |
5.4 |
2.47 |
4.99 |
0 |
|
Average CDS length (bp) |
825.98 |
755.96 |
845.13 |
838.18 |
|
Average intergenic length (bp) |
134.86 |
162.18 |
139.62 |
160.14 |
|
Protein coding density (%) |
88.01 |
86.25 |
88.01 |
87.12 |
|
Number of Genomic Objects (CDS, fCDS, rRNA, tRNA, miscRNA) |
6,628 |
280 |
6,791 |
274 |
|
Number of CDSs |
6,512 |
272 |
6,683 |
267 |
|
Number of fCDSs |
54 |
6 |
40 |
4 |
|
Number of misc_RNAs |
14 |
2 |
16 |
3 |
|
Number of rRNAs |
3 |
0 |
3 |
0 |
| Number of tRNAs | 45 | 0 | 49 | 0 |