Table 3.
COG functional assignment of CDS detected in the genomes of STM 2683 and STM 4661
| COG Class ID | Process | Description | CDS Number | |
|---|---|---|---|---|
| 2683* | 4661** | |||
| B | INFORMATION STORAGE AND PROCESSING | Chromatin structure and dynamics | 5 | 6 | 
| C1, 2 | METABOLISM | Energy production and conversion | 370 | 393 | 
| D2 | CELLULAR PROCESSES AND SIGNALING | Cell cycle control, cell division, chromosome partitioning | 54 | 51 | 
| E1 | METABOLISM | Amino acid transport and metabolism | 1111 | 1135 | 
| F | METABOLISM | Nucleotide transport and metabolism | 134 | 128 | 
| G1 | METABOLISM | Carbohydrate transport and metabolism | 628 | 604 | 
| H | METABOLISM | Coenzyme transport and metabolism | 194 | 210 | 
| I | METABOLISM | Lipid transport and metabolism | 279 | 295 | 
| J1, 2 | INFORMATION STORAGE AND PROCESSING | Translation, ribosomal structure and biogenesis | 247 | 257 | 
| K | INFORMATION STORAGE AND PROCESSING | Transcription | 526 | 540 | 
| L2 | INFORMATION STORAGE AND PROCESSING | Replication, recombination and repair | 278 | 257 | 
| M1, 2 | CELLULAR PROCESSES AND SIGNALING | Cell wall/membrane/envelope biogenesis | 322 | 343 | 
| N2 | CELLULAR PROCESSES AND SIGNALING | Cell motility | 69 | 48 | 
| O2, 3 | CELLULAR PROCESSES AND SIGNALING | Posttranslational modification, protein turnover, chaperones | 227 | 213 | 
| P1, 3 | METABOLISM | Inorganic ion transport and metabolism | 629 | 654 | 
| Q | METABOLISM | Secondary metabolite biosynthesis, transport and catabolism | 249 | 263 | 
| R1 | POORLY CHARACTERIZED | General function prediction only | 994 | 1058 | 
| S | POORLY CHARACTERIZED | Function unknown | 421 | 454 | 
| T2 | CELLULAR PROCESSES AND SIGNALING | Signal transduction mechanisms | 237 | 237 | 
| U2 | CELLULAR PROCESSES AND SIGNALING | Intracellular trafficking, secretion, and vesicular transport | 107 | 91 | 
| V | CELLULAR PROCESSES AND SIGNALING | Defense mechanisms | 204 | 205 | 
| W | CELLULAR PROCESSES AND SIGNALING | Extracellular structures | 1 | 1 | 
* 4,903 CDS out of 6,844 (71.6%) were assigned to at least one COG class ID for STM 2683.
** 5,042 CDS out of 6,994 (72.1%) were assigned to at least one COG Class ID for STM 4661.
1 COG Class representing more than 5% of the transcriptomes for both strains and for all treatments (cf. Figure 3).
2 Transcriptionally over-active COG Class for both strains and in all treatments (cf. Figure 4).
3 COG Class presenting a higher proportion of differentially regulated genes for both strains and both metal treatments when compared to control treatments (cf. Figure 5).