Table 3.
COG functional assignment of CDS detected in the genomes of STM 2683 and STM 4661
COG Class ID | Process | Description |
CDS Number |
|
---|---|---|---|---|
2683* | 4661** | |||
B |
INFORMATION STORAGE AND PROCESSING |
Chromatin structure and dynamics |
5 |
6 |
C1, 2 |
METABOLISM |
Energy production and conversion |
370 |
393 |
D2 |
CELLULAR PROCESSES AND SIGNALING |
Cell cycle control, cell division, chromosome partitioning |
54 |
51 |
E1 |
METABOLISM |
Amino acid transport and metabolism |
1111 |
1135 |
F |
METABOLISM |
Nucleotide transport and metabolism |
134 |
128 |
G1 |
METABOLISM |
Carbohydrate transport and metabolism |
628 |
604 |
H |
METABOLISM |
Coenzyme transport and metabolism |
194 |
210 |
I |
METABOLISM |
Lipid transport and metabolism |
279 |
295 |
J1, 2 |
INFORMATION STORAGE AND PROCESSING |
Translation, ribosomal structure and biogenesis |
247 |
257 |
K |
INFORMATION STORAGE AND PROCESSING |
Transcription |
526 |
540 |
L2 |
INFORMATION STORAGE AND PROCESSING |
Replication, recombination and repair |
278 |
257 |
M1, 2 |
CELLULAR PROCESSES AND SIGNALING |
Cell wall/membrane/envelope biogenesis |
322 |
343 |
N2 |
CELLULAR PROCESSES AND SIGNALING |
Cell motility |
69 |
48 |
O2, 3 |
CELLULAR PROCESSES AND SIGNALING |
Posttranslational modification, protein turnover, chaperones |
227 |
213 |
P1, 3 |
METABOLISM |
Inorganic ion transport and metabolism |
629 |
654 |
Q |
METABOLISM |
Secondary metabolite biosynthesis, transport and catabolism |
249 |
263 |
R1 |
POORLY CHARACTERIZED |
General function prediction only |
994 |
1058 |
S |
POORLY CHARACTERIZED |
Function unknown |
421 |
454 |
T2 |
CELLULAR PROCESSES AND SIGNALING |
Signal transduction mechanisms |
237 |
237 |
U2 |
CELLULAR PROCESSES AND SIGNALING |
Intracellular trafficking, secretion, and vesicular transport |
107 |
91 |
V |
CELLULAR PROCESSES AND SIGNALING |
Defense mechanisms |
204 |
205 |
W | CELLULAR PROCESSES AND SIGNALING | Extracellular structures | 1 | 1 |
* 4,903 CDS out of 6,844 (71.6%) were assigned to at least one COG class ID for STM 2683.
** 5,042 CDS out of 6,994 (72.1%) were assigned to at least one COG Class ID for STM 4661.
1 COG Class representing more than 5% of the transcriptomes for both strains and for all treatments (cf. Figure 3).
2 Transcriptionally over-active COG Class for both strains and in all treatments (cf. Figure 4).
3 COG Class presenting a higher proportion of differentially regulated genes for both strains and both metal treatments when compared to control treatments (cf. Figure 5).