Skip to main content
. 2013 Apr 30;14:292. doi: 10.1186/1471-2164-14-292

Table 3.

COG functional assignment of CDS detected in the genomes of STM 2683 and STM 4661

COG Class ID Process Description CDS Number
2683* 4661**
B
INFORMATION STORAGE AND PROCESSING
Chromatin structure and dynamics
5
6
C1, 2
METABOLISM
Energy production and conversion
370
393
D2
CELLULAR PROCESSES AND SIGNALING
Cell cycle control, cell division, chromosome partitioning
54
51
E1
METABOLISM
Amino acid transport and metabolism
1111
1135
F
METABOLISM
Nucleotide transport and metabolism
134
128
G1
METABOLISM
Carbohydrate transport and metabolism
628
604
H
METABOLISM
Coenzyme transport and metabolism
194
210
I
METABOLISM
Lipid transport and metabolism
279
295
J1, 2
INFORMATION STORAGE AND PROCESSING
Translation, ribosomal structure and biogenesis
247
257
K
INFORMATION STORAGE AND PROCESSING
Transcription
526
540
L2
INFORMATION STORAGE AND PROCESSING
Replication, recombination and repair
278
257
M1, 2
CELLULAR PROCESSES AND SIGNALING
Cell wall/membrane/envelope biogenesis
322
343
N2
CELLULAR PROCESSES AND SIGNALING
Cell motility
69
48
O2, 3
CELLULAR PROCESSES AND SIGNALING
Posttranslational modification, protein turnover, chaperones
227
213
P1, 3
METABOLISM
Inorganic ion transport and metabolism
629
654
Q
METABOLISM
Secondary metabolite biosynthesis, transport and catabolism
249
263
R1
POORLY CHARACTERIZED
General function prediction only
994
1058
S
POORLY CHARACTERIZED
Function unknown
421
454
T2
CELLULAR PROCESSES AND SIGNALING
Signal transduction mechanisms
237
237
U2
CELLULAR PROCESSES AND SIGNALING
Intracellular trafficking, secretion, and vesicular transport
107
91
V
CELLULAR PROCESSES AND SIGNALING
Defense mechanisms
204
205
W CELLULAR PROCESSES AND SIGNALING Extracellular structures 1 1

* 4,903 CDS out of 6,844 (71.6%) were assigned to at least one COG class ID for STM 2683.

** 5,042 CDS out of 6,994 (72.1%) were assigned to at least one COG Class ID for STM 4661.

1 COG Class representing more than 5% of the transcriptomes for both strains and for all treatments (cf. Figure 3).

2 Transcriptionally over-active COG Class for both strains and in all treatments (cf. Figure 4).

3 COG Class presenting a higher proportion of differentially regulated genes for both strains and both metal treatments when compared to control treatments (cf. Figure 5).