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. 2013 May 6;13:7. doi: 10.1186/1472-6807-13-7

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Copyright © 2013 Honorat et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Structure of the ABCC11 complex for molecular dynamics simulation and RMSD calculations. (A) The inward facing model of ABCC11 was inserted in a phospholipid bilayer membrane surrounded by solvent. (B) 1D-RMSD of the ABCC11 complex during the dynamics simulation before (grey) and after (black) reaching equilibrium state. (C) 2D-RMSD calculations (X and Y axes represent the frames), carried out on 500 conformations selected with a stride of 2 from the 1000 produced during the indicated time simulation. The four steady-state conformations of each simulation are numbered. Warm colors (yellow and white) revealed steady state was reached.