Table 4.

Mapped microsatellite loci in Culex tarsalis with orthologs to flanking regions in the Culex quinquefasciatus genome

			Corresponding regions in C. quinquefasciatus genome
Locus	Location	Alignment length (no. of bp)	Supercontig	From (bp)	To (bp)	Sequence identity
CUTB210	Linkage group 1 (Chromosome 3)	257	3.22	1047680	1047937	0.91
CUTB218*		92	3.10	749087	749179	0.89
CUTB228		481	3.355	192600	193081	0.72
CUTA220		435	3.16	1042459	1042894	0.86
CUTC203		214	3.198	92748	92962	0.71
CUTB203	Linkage group 2	459	3.185	332456	332915	0.81
CUTA6R.7		476	3.185	332456	332932	0.81
CUTC12		375	3.369	252315	252690	0.80
CUTB223		315	3.561	223790	224105	0.74
CUTC102**		469	3.384	128435	128904	0.78
CUTD211		240	3.50	892111	892351	0.84
CUTB212		400	3.297	90515	90915	0.70
CUTD114		299	3.805	61858	62157	0.88
CUTD102		628	3.258	59592	60220	0.91
CUTD113		251	3.1	2851920	2852171	0.96
CUTA109.7***		268	3.1233	65213	65481	0.69
		355	3.1424	55752	56107	0.70
CUTB1**	Linkage group 3	151	3.32	76478	76629	0.78
CUTD120	Linkage group 4	317	3.49	490661	490978	0.79
CUTD203		407	3.1235	59619	60026	0.71

All sequence positions in C. quinquefasciatus refer to genome version CpipJ1, released in March 2007

^*Corresponding supercontig in C. quinquefasciatus begins at position 371 of C. tarsalis microsatellite-containing sequence.

^**Microsatellite repeat region absent in corresponding C. quinquefasciatus sequence.

^***CUTA109 shares similarity to two regions in the C. quinquefasciatus genome.