Table 1.
Regions sequenced in the two strains of NOD mouse showing numbers of sequenced bp and numbers of sequenced BACs
| Region | Chromosome | Strain | Library | Length bp | Number of BACs |
|---|---|---|---|---|---|
| Idd1 (MHC) | 17 | NOD/ShiLtJ | CHORI-29 | 4 810 977 | 29 |
| Idd1 (MHC) | 17 | NOD/MrkTac | DIL | 4 256 209 | 34 |
| Idd10 | 3 | NOD/MrkTac | DIL | 1 195 666 | 10 |
| Idd16.1 | 17 | NOD/ShiLtJ | CHORI-29 | 1 908 920 | 12 |
| Idd18.1 | 3 | NOD/MrkTac | DIL | 689 363 | 5 |
| Idd18.2 | 3 | NOD/MrkTac | DIL | 466 430 | 3 |
| Idd3 | 3 | NOD/MrkTac | DIL | 697 603 | 5 |
| Idd4.1 | 11 | NOD/MrkTac | DIL | 1 550 185 | 11 |
| Idd4.2 | 11 | NOD/MrkTac | DIL | 1 462 311 | 12 |
| Idd4.2Q | 11 | NOD/ShiLtJ | CHORI-29 | 3 086 744 | 18 |
| Idd5.1_CHORI | 1 | NOD/ShiLtJ | CHORI-29 | 456 798 | 2 |
| Idd5.1 | 1 | NOD/MrkTac | DIL | 853 859 | 7 |
| Idd5.3 | 1 | NOD/MrkTac | DIL | 3 710 957 | 32 |
| Idd5.4 | 1 | NOD/MrkTac | DIL | 326 027 | 2 |
| Idd6.1+2 | 6 | NOD/ShiLtJ | CHORI-29 | 5 657 964 | 35 |
| Idd6.AM | 6 | NOD/ShiLtJ | CHORI-29 | 1 609 414 | 11 |
| Idd9.1 | 4 | NOD/MrkTac | DIL | 2 950 841 | 25 |
| Idd9.1M | 4 | NOD/MrkTac | DIL | 215 692 | 2 |
| Idd9.2 | 4 | NOD/MrkTac | DIL | 2 864 054 | 22 |
| Idd9.3 | 4 | NOD/MrkTac | DIL | 1 625 541 | 12 |
| Total from DIL library | 22 864 738 | 182 | |||
| Total from CHORI-29 library | 17 530 817 | 107 | |||
| Total | 40 395 555 | 289 | |||
Candidate regions Idd6.1 and Idd6.2 were combined for ease of mapping and sequencing due to their proximity in the genome and are referred to as Idd6.1 + 2. Regions with a letter suffix distinguish regions originally given the same name but were located in different regions of the genome. Idd5.1_CHORI is contained wholly within DIL Idd5.1 and was sequenced to establish inter-NOD strain differences.