Table 3.
Number of changes by type and variation rate in the NOD Idd regions
| Region | SNPs | Indels | Length | SNPs/Mb | bp/SNP |
|---|---|---|---|---|---|
| Idd10 | 2833 | 485 | 1 531 595 | 1850 | 541 |
| Idd16.1 | 1598 | 464 | 1 774 776 | 900 | 1111 |
| Idd18.1 | 253 | 111 | 948 181 | 267 | 3748 |
| Idd18.2 | 1506 | 289 | 536 172 | 2809 | 356 |
| Idd3 | 3640 | 583 | 478 088 | 7614 | 131 |
| Idd4.1: 1-1248286 | 923 | 315 | 1 174 414 | 786 | 1272 |
| Idd4.2 | 534 | 173 | 1 490 088 | 358 | 2790 |
| Idd4.2Q | 16 787 | 2543 | 2 526 934 | 6643 | 151 |
| Idd5.1 | 3191 | 466 | 2 736 539 | 1166 | 858 |
| Idd5.1_CHORI | 1157 | 233 | 400 982 | 2885 | 347 |
| Idd5.3 | 35 745 | 4311 | 3 033 670 | 11 783 | 85 |
| Idd5.4 | 599 | 126 | 221 559 | 2704 | 370 |
| Idd6.1_2 | 23 206 | 3528 | 5 528 888 | 4197 | 238 |
| Idd6.AM: 2496-440951 | 5202 | 480 | 425 133 | 12 236 | 82 |
| Idd9.1 | 8601 | 1634 | 2 896 193 | 2970 | 337 |
| Idd9.1M | 1 | 3 | 127 081 | 8 | 127 081 |
| Idd9.2: 1066933-3054144 | 13 443 | 2148 | 1 861 587 | 7221 | 138 |
| Idd9.3 | 4707 | 929 | 1 336 693 | 3521 | 284 |
| All | 123 926 | 18 821 | 29 028 573 | 4269 | 234 |
Fragments with structural variation were removed from Idd4.1, Idd6.AM and Idd9.2. Length shown is the remaining after repeat masking the region sequence.