Table 2. (d)CAPS markers used for identification of ACCase mutant alleles in wild-oat populations. Ambiguity nucleotide codes: R=A/G, Y=C/T.
Target mutation | Primer pair used | Type | Restriction enzyme | Recognition site |
Fragment size (bp)
|
|
---|---|---|---|---|---|---|
Susceptible (S) | Resistant (R) | |||||
1781 | NsiI1781F/ NsiI1781R | dCAPS | NsiI | 5′-ATGCA^T-3′ | 130, 35 | 165 |
2078 | RsaI2078F/ RsaI2078R | dCAPS | Rsal | 5′-GT^AC-3′ | 181 | 147, 34 |
2088 | SQCT-α1 F/ SQCT-α1 R | CAPS | HaeII | 5′-RGCGC^Y-3′ | 602 | 529,73 |
Abbreviations: ACCase, acetyl-coenzyme A carboxylase; dCAPS, derived cleaved amplified polymorphic sequence.