Table 4.

Power comparisons for the different methods under the various effect and sample sizes considered when there exist both protective and risk variants

	KATE		GRANVIL	SKAT
	weights = 1	weights ~ beta
N = 1,000
|beta|=1.2	0.625	0.665	0.220	0.999
|beta|=2.0	0.921	0.934	0.367	1
|beta|=3.0	0.969	0.973	0.480	1
|beta| ∝ MAF	0.331	0.393	0.147	0.970
N = 2,000
|beta|=1.2	0.891	0.909	0.380	0.999
|beta|=2.0	0.982	0.983	0.505	1
|beta|=3.0	0.991	0.994	0.621	1
|beta| ∝ MAF	0.577	0.636	0.213	0.998
N = 3,000
|beta|=1.2	0.952	0.960	0.426	1
|beta|=2.0	0.987	0.990	0.599	1
|beta|=3.0	0.988	0.991	0.672	1
|beta| ∝ MAF	0.769	0.816	0.292	1