Table 2.
Gene Lists and Fluorescent In Situ Hybridization (FISH) analysis for DNA‐dependent DNA replication GO‐BP category
|
GeneID |
Sample |
FISH |
Gene |
Prob. |
GeneID |
Sample |
FISH |
Gene |
Prob. |
|---|---|---|---|---|---|---|---|---|---|
| match | prec. | score | match | prec. | score | ||||
| CG5924 |
LD38710 |
|
0.923 |
0.705 |
CG1109 |
LD26389 |
|
0.798 |
0.592 |
| CG1109 |
LD27350 |
|
0.923 |
0.736 |
CG8290 |
LD37351 |
+ |
0.798 |
0.575 |
| CG7663 |
LD46979 |
+ |
0.923 |
0.724 |
CG2910 |
GH11110 |
|
0.798 |
0.598 |
| CG7384 |
LD46023 |
|
0.923 |
0.76 |
CG10364 |
LD32040 |
- |
0.798 |
0.58 |
| CG14464 |
LD29015 |
|
0.923 |
0.707 |
CG5877 |
LD29352 |
|
0.79 |
0.572 |
| CG16892 |
LD26813 |
+ |
0.923 |
0.728 |
CG10625 |
LD39545 |
- |
0.79 |
0.568 |
| CG1578 |
LD28359 |
+ |
0.923 |
0.755 |
CG17509 |
GH12788 |
|
0.787 |
0.568 |
| CG16892 |
LD42637 |
|
0.923 |
0.739 |
CG11409 |
LD40802 |
|
0.787 |
0.607 |
| CG11122 |
LD29040 |
|
0.86 |
0.644 |
CG30007 |
LD29335 |
|
0.787 |
0.58 |
| CG9300 |
LD21924 |
|
0.86 |
0.666 |
CG17681 |
LD30009 |
|
0.787 |
0.573 |
| CG3287 |
SD03445 |
|
0.86 |
0.643 |
CG18622 |
LD26416 |
|
0.787 |
0.539 |
| CG1960 |
GH21591 |
|
0.86 |
0.66 |
CG31152 |
LD29477 |
+ |
0.787 |
0.545 |
| CG1024 |
LD28076 |
|
0.86 |
0.652 |
CG11990 |
LD47989 |
+ |
0.787 |
0.549 |
| CG13096 |
SD03546 |
|
0.86 |
0.664 |
CG6724 |
LD40657 |
|
0.783 |
0.589 |
| CG11596 |
LD45925 |
|
0.86 |
0.682 |
CG32069 |
LD47413 |
|
0.783 |
0.565 |
| CG4857 |
LD29423 |
+ |
0.86 |
0.638 |
CG2962 |
LD27487 |
|
0.783 |
0.578 |
| CG4949 |
LD46305 |
+ |
0.86 |
0.669 |
CG6049 |
LD27763 |
|
0.776 |
0.558 |
| CG11943 |
SD04935 |
|
0.86 |
0.703 |
CG2260 |
LD30339 |
|
0.772 |
0.563 |
| CG2469 |
LD30285 |
+ |
0.86 |
0.677 |
CG3735 |
LD35854 |
|
0.771 |
0.553 |
| CG11596 |
LD42227 |
+ |
0.839 |
0.66 |
CG7110 |
LD39933 |
- |
0.771 |
0.577 |
| CG12785 |
LD27528 |
|
0.839 |
0.616 |
CG12202 |
LD30511 |
+ |
0.771 |
0.584 |
| CG11329 |
LD26217 |
|
0.839 |
0.619 |
CG9591 |
LD26057 |
+ |
0.771 |
0.554 |
| CG6066 |
LD27582 |
|
0.839 |
0.621 |
CG12340 |
LD26050 |
|
0.771 |
0.552 |
| CG17050 |
LD35611 |
|
0.839 |
0.647 |
CG30020 |
LD40262 |
|
0.771 |
0.549 |
| CG18004 |
LD27741 |
|
0.839 |
0.662 |
CG12050 |
LD30416 |
+ |
0.771 |
0.561 |
| CG1647 |
LD30287 |
|
0.839 |
0.591 |
CG6151 |
LD28933 |
|
0.766 |
0.567 |
| CG31697 |
SD02518 |
|
0.839 |
0.618 |
CG14657 |
LD28447 |
|
0.766 |
0.556 |
| CG15736 |
LD33780 |
+ |
0.83 |
0.619 |
CG4203 |
LD29184 |
|
0.761 |
0.537 |
| CG2691 |
LD46946 |
|
0.829 |
0.61 |
CG4281 |
SD03946 |
|
0.76 |
0.548 |
| CG7728 |
LD39680 |
+ |
0.812 |
0.592 |
CG14005 |
LD30293 |
|
0.76 |
0.566 |
| CG31163 |
SD09611 |
+ |
0.812 |
0.598 |
CG9028 |
LD27194 |
+ |
0.76 |
0.555 |
| CG3680 |
LD27862 |
|
0.81 |
0.63 |
CG7824 |
LD26655 |
|
0.76 |
0.542 |
| CG3362 |
LD28544 |
|
0.81 |
0.595 |
CG7407 |
LD29166 |
- |
0.758 |
0.548 |
| NA ∗ |
LD42550 |
|
0.81 |
0.612 |
CG3338 |
LD27356 |
+ |
0.756 |
0.524 |
| CG11906 | LD27134 | 0.798 | 0.566 |
∗CG number not known
DNA‐dependent DNA replication GO‐BP category (along with oxidative phosphorylation) was selected for further biological validation using fluorescent in situ hybridization (FISH) analysis of early D. melanogaster embryos. In this table, genes that are predicted to belong to this category are shown along with information regarding their presence in the FISH database. Each of the genes (i.e. CG numbers) in the list was searched in a D. melanogaster FISH database to visually examine the spatial and temporal mRNA expression for that gene during early embryogenesis. Genes that are marked with (+) or (-) sign had images present in the database. Those that had patterns that largely matched that of known genes in the category are marked with a (+). If either their temporal or their spatial pattern did not match the known gene pattern, they are marked with (-). For each gene the “gene‐precision” score and the average probability estimate output from SVM are reported.