Table 4.

Statistics of the matrices used for four phylogeographic analyses (with or without clones, genome aligned or unaligned reads).

Potential Clones Included
Genome-aligned
Total number of characters	472
Proportion of invariable characters	0.364
Proportion of parsimony-informative characters	0.553
Proportion of autapomorphic characters	0.083
Proportion of missing data	0.327
Unaligned
Total number of characters	344
Proportion of invariable characters	0.471
Proportion of parsimony-informative characters	0.439
Proportion of autapomorphic characters	0.090
Proportion of missing data	0.335
Potential Clones Exclued
Genome-aligned
Total number of characters	484
Proportion of invariable characters	0.362
Proportion of parsimony-informative characters	0.519
Proportion of autapomorphic characters	0.120
Proportion of missing data	0.334
Unaligned
Total number of characters	432
Proportion of invariable characters	0.477
Proportion of parsimony-informative characters	0.398
Proportion of autapomorphic characters	0.125
Proportion of missing data	0.408