Table 1. HIV-1 genotype characterizations of Dehong IDU subjects.
| Sequence ID | Near-full-length or half genome | gag (790–2292) | pol (2253–3318) | vpr-env (5671–6449) | Genotype§ |
| 05YNLC186 | C | B′C | C | B′C | |
| 05YNLC187* | B′ | B′ | |||
| 05YNRL01 | CB′C† | CB′C | B′C | C | B′C |
| 05YNRL05 | C01C01C† | C | 01C | CRF01_AE/C | |
| 05YNRL07 | CB′C | C | C | C | B′C |
| 05YNRL08 | CB′CB′CB′C | C B′C B′ | B′C | CB′ | B′C |
| 05YNRL09 | CB′CB′CB′C | C B′C B′ | B′C | C | B′C |
| 05YNRL17 | CB′C | CB′C | C | C | B′C |
| 05YNRL19 | CB′C | B′C | C | B′C | |
| 05YNRL20 | CB′C | CB′C | C | C | B′C |
| 05YNRL25 | CB′C | CB′C | C | C | B′C |
| 05YNRL34 | CB′CB′C | B′ | B′C | B′C | |
| 05YNRL35 | B′ | B′ | B′ | B′ | |
| 05YNRL43 | C | CRF01_AE | C | CRF01_AE/C | |
| 06YNLC02 | C | B′C | C | B′C | |
| 06YNLC04* | B′ | B′ | |||
| 06YNLC05 | B′ | B′ | B′ | ||
| 06YNLC07 | CB′C | B′C | B′C | ||
| 06YNLC15 | B′C | CB′C | B′C | ||
| 06YNLC16 | CB′C | B′C | C | B′C | |
| 06YNLC17* | B′C | B′C | |||
| 06YNLC19 | CB′ | B′C | C | B′C | |
| 06YNLC21 | CB′C | B′C | C | B′C | |
| 06YNLC235 | B′C | C | B′C | ||
| 06YNLC26 | CB′C | B′C | B′C | ||
| 06YNLC27 | CB′C | B′C | C | B′C | |
| 06YNLC28 | C | CB′C | C | C | B′C |
| 06YNLC30 | CB′C | B′C | C | B′C | |
| 06YNLC31 | CB′C | B′C | C | B′C | |
| 06YNLC32 | C‡ | CB′C | B′C | C | B′C |
| 06YNLC38 | CB′C | B′C | C | B′C | |
| 06YNLC40 | B′C | B′C | C | B′C | |
| 06YNLC45 | CB′C | B′C | C | B′C | |
| 06YNLC49 | C | B′C | CB′C | B′C | |
| 06YNLC51 | C B′ | B′ | B′C | ||
| 06YNLC52 | C | B′C | C | B′C | |
| 06YNLC53 | CB′C | B′C | C | B′C | |
| 06YNLC54 | CB′C | B′C | C | B′C | |
| 06YNLC55 | CB′C | B′C | C | B′C | |
| 06YNRL106 | CB′CB′CB′C | CB′CB′C | B′C | C | B′C |
| 06YNRL115 | C | C | C | C | |
| 07YNLC08 | CB′CB′CB′CB′CB′CB′CB′C | CB′CB′C | B′C | CB′C | B′C |
| 07YNLC13 | CB′CB′CB′C† | CB′C | B′C | B′C | |
| 07YNLC18 | CB′C | CB′C | B′C | C | B′C |
| 07YNLC22 | B′CB′C | B′ | B′ | B′ | B′C |
| 09YNLC10 | B′CB′CB′C | B′ | B′C | C | B′C |
| 09YNLC216002 | CB′C | CB′C | B′C | C | B′C |
| 09YNLC216003 | CB′CB′ | B′C | B′C | ||
| 09YNLC216004 | CB′CB′ | B′C | C | B′C | |
| 09YNLC216005 | C‡ | CB′C | B′C | C | B′C |
| 09YNLC216017 | C | B′ | B′C | ||
| 09YNLC216018 | CB′C | B′C | C | B′C | |
| 09YNLC216027 | CB′C | CB′C | B′C | C | B′C |
| 09YNLC216029 | B′ | B′ | C | B′C | |
| 09YNLC216031 | CB′CB′CB′C | C | B′C | C | B′C |
| 09YNLC216036 | CB′CB′CB′C | C | B′ | C | B′C |
| 09YNLC216038 | B′ | B′C | B′ | B′C | |
| 09YNLC216043 | B′ | B′ | B′ | B′ | |
| 09YNLC216053 | CB′C | B′C | C | B′C | |
| 09YNLC216055 | CRF01_AE | CRF01_AE | CRF01_AE | CRF01_AE | |
| 09YNLC492 | CB′CB′C | CB′C | B′C | C | B′C |
| 09YNLC494 | B′CB′CB′C | B′ | B′C | C | B′C |
| 09YNLC496 | CB′CB′C | CB′C | B′C | C | B′C |
| 09YNLC497 | CB′CB′CB′C | C | B′C | CB′C | B′C |
| 09YNLC499 | CB′CB′CB′C | CB′C | B′C | C | B′C |
| 09YNLX133 | C | C | C | C | C |
| 09YNLX19 | CB′C | CB′C | C | C | B′C |
| 09YNLX219003 | CB′C | C | C | B′C | |
| 09YNLX219006 | CB′C | 01C | CRF01_AE | CRF01_AE/B/C | |
| 09YNLX219028 | CB′C | C | C | B′C | |
| 09YNLX219037 | CB′C | CB′CB′ | B′C | C | B′C |
| 09YNLX219050* | B′ | B′ | |||
| 09YNLX219051 | CB′C | C | B′C | ||
| 09YNLX219053 | CB′ | B′ | B′C | ||
| 09YNLX227203 | B′CB′C01CB′CB′† | CB′ | B′C | CRF01_AE/B/C | |
| 09YNLX47 | CB′CB′CB′C | CB′CB′ | B′C | C | B′C |
| 09YNLX90 | C | C | C | C | C |
| 09YNRL215005 | CB′C | C | B′C | ||
| 09YNRL215009 | B′† | B′ | B′ | B′ | B′ |
| 09YNRL215012 | C | C | C | C | |
| 09YNRL215013 | C | C | C | C | |
| 09YNRL215025 | B′CB′CB′CB′ | B′ | B′C | CB′C | B′C |
| 09YNRL215030 | CB′C | B′C | C | B′C | |
| 09YNRL215042 | B′ | B′ | B′ | B′ | B′ |
| 09YNRL215050 | CB′CB′CB′C | C | B′C | CB′C | B′C |
| 09YNRL215054 | CB′ | B′ | C | B′C | |
| 09YNYJ217006 | 01B′C | B′C01 | CRF01_AE/B/C | ||
| 09YNYJ217010 | B′CB′ | B′ | B′ | B′ | B′C |
| 09YNYJ217013 | CB′C | C | C | B′C | |
| 09YNYJ217016 | CB′CB′C | CB′C | B′C | C | B′C |
| 09YNYJ217036 | CB′C‡ | C | B′C | C | B′C |
| 09YNYJ217040 | C | C | CB′C | B′C | |
| 09YNYJ473 | CB′CB′C† | CB′ | B′C | B′C | |
| 09YNYJ479 | CB′CB′CB′C | CB′C | C | CB′C | B′C |
| 09YNYJ217055 | CB′C | C | B′C |
*
These sequences were not included in the subtype related factors analysis.
†
5′ half genome sequences.
‡
3′ half genome sequences.
§
Genotype was determined based on all sequences available.