Table 1. Relationship of Power to Independent Non-Causal and Causal SNPs1,2.
Gene-Based Test | Estimated absolute power loss for one additional non-causal SNP# | Estimated absolute power gain for one additional causal SNP | Estimated number of non-causal SNPs which cancel out the power gained from one causal SNP |
GATES | 0.0025 | 0.0160 | 6.3 |
VEGAS-SUM | 0.0028 | 0.0299 | 10.6 |
VEGAS-MAX | 0.0025 | 0.0151 | 6.1 |
LR-PC | 0.0023 | 0.0267 | 11.5 |
LR | 0.0027 | 0.0305 | 11.4 |
Using a multiple regression model including all parameter and simulation results.
Assuming all other parameters are held constant.