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. Author manuscript; available in PMC: 2013 Jun 3.
Published in final edited form as: Oral Dis. 2011 Sep 6;18(2):127–131. doi: 10.1111/j.1601-0825.2011.01849.x

Table 1.

Summary of miRNA candidates selected for validation. Colored rows indicate miRNAs tested and validated by qPCR so far. Candidate-4 had reads matching to both positive and negative strands

Selected miRNA candidates for validation
Novel_ID miRBase ID Mature sequence Precursor location
Matching miRNAs predicted on the same precursor
 Candidate 1-3p hsa-miR-4524b-3p GAGACAGGTTCATGCTGCTA chr17:67095683-67095797
 Candidate 1-5p hsa-miR-4524b-5p ATAGCAGCATAAGCCTGTCTC
 Candidate 2-3p TCCACTGCCACTACCTAAT chr7:134542275-134542377
 Candidate 2-5p ATTAGGTAGTGGCAGTGGA
 Candidate 3-3p hsa-miR-5571-3p GTCCTAGGAGGCTCCTCTG chr22:21558447-21558559
 Candidate 3-5p hsa-miR-5571-5p CAATTCTCAAAGGAGCCTCCC
 Candidate 4 (−) AGACACACACATATATAGGTA chr1:63610693-63610829
 Candidate 4 (+) TACCTATATATGTGTGTGTCT
Single unique miRNAs predicted in more than one sample
 Candidate 5 TCTGGCAGGGAGAAGAGCCCCT chr5:111833616-111833724
 Candidate 6 TTTGGTGCACTGGCCGGGAAT chr6:119008116-119008242
 Candidate 7 TAGCCAATTGTCCATCTTTA chr8:125903374-125903508
 Candidate 8 CTACTAACCTGTGAAGTAGG chrX:96207982-96208116
 Candidate 9 hsa-miR-5100 TTCAGATCCCAGCGGTGCCTCT chr10:42813017-42813135
 Candidate 10 CCCGCCCCTCCGCGCCCCCCCCCC chr19:13123543-13123645
 Candidate 11 hsa-miR-5572 GTTGGGGTGCAGGGGTCTGCT chr15:78660499-78660635