Table 1. Nematode genomes in WormBase.
| Species |
Bcladea |
Mode of reproductionb |
Reference strain sequenced |
Integrated into WormBase |
WS230 status |
|||||
|---|---|---|---|---|---|---|---|---|---|---|
| Assembly versione | Sequenced genome size (Mb) | Top-level fragments | Scaffold N50f | CDS models (distinct loci) | Gene set status | |||||
| C. elegans |
V |
androdioecious |
Bristol N2 |
WS1 |
WS230 |
100.3 |
6 |
17493793 |
25634 (20517) |
Curated |
| C. briggsae |
V |
androdioecious |
AF16 |
WS132 |
CAAC03000000 |
108.4 |
367 |
17485439 |
21961 (21936) |
Curated |
| C. remanei |
V |
gonochoristic |
PB4641 |
WS185 |
AAGD02000000 |
145.5 |
3670 |
461060 |
31476 (31471) |
Curated |
| Brugia malayi |
III |
gonochoristic |
TRS |
WS185 |
AAQA01000000 |
95.8 |
27210 |
37841 |
21332 (18348) |
Externalg |
| Pristionchus pacificus |
V |
hermaphoditic |
PS312 |
WS194 |
v2 (Sep. 2010) |
172.5 |
18083 |
1244534 |
24217 (24216) |
External |
| C. japonica |
V |
gonochoristic |
DF5080 |
WS195 |
ABLE03000000 |
166.3 |
18817 |
94149 |
36105 (29962) |
Curated |
| C. brenneri |
V |
gonochoristic |
PB2801 |
WS196 |
ABEG02000000 |
190.4 |
3305 |
368319 |
30670 (30667) |
Curated |
| Meloidogyne hapla |
IV |
gonochoristic |
VW9 |
WS204 |
ABLG01000000 |
53.0 |
3452 |
84000 |
13072 (13072) |
External |
| Meloidogyne incognita |
IV |
gonochoristic |
Morelos |
WS205 |
CABB01000000 |
82.1 |
9538 |
83000 |
- |
Externalh |
| Hemonchus contortus |
V |
gonochoristic |
MHco3 (ISE) |
WS208 |
v1 (Aug. 2008) |
298.0 |
59707 |
13338 |
6201 (6201) |
WormBase Predicted |
| C. angaria |
V |
gonochoristic |
PS1010 |
WS218 |
AEHI01000000i |
79.8 |
33559 |
9453 |
26265 (22622) |
External |
| Trichinella spiralis |
I |
gonochoristic |
ISS 195 |
WS225 |
ABIR02000000 |
63.5 |
6863 |
6373445 |
16380 (16380) |
External |
| C. sp 9 |
V |
gonochoristic |
JU1422 |
WS226 |
v1 (June 2011) |
204.3 |
7636 |
196652 |
45167 (45167) |
WormBase predicted |
| C. sp 11 |
V |
androdioecious |
JU1373 |
WS226 |
AEKS01000000 |
79.3 |
665 |
20921866 |
27721 (22326) |
External |
| Strongyloides ratti |
IV |
gonochoristic and parthenogeneticc |
ED321 Heterogonic |
WS226 |
CACX01000000 |
52.6 |
2184 |
359029 |
8188 (8077) |
WormBase Predicted |
| Ascaris suum |
III |
gonochoristic |
Natural isolate |
WS229 |
v1 (Aug. 2011) |
272.8 |
29831 |
407899 |
18449 (18449) |
External |
| Bursaphelenchus xylophilus |
IV |
gonochoristic |
Ka4C1 |
WS229 |
CADV01000000 |
74.6 |
5527 |
1158000 |
18074 (18074) |
External |
| Heterorhabditis bacteriophora |
V |
gonochoristic and hermaphroditicc,d |
M31e |
WS229 |
ACKM01000000 |
77.0 |
1240 |
312328 |
- |
Externalh |
| C. sp 5 | V | gonochoristic | DRD-2008 JU800 | WS230 | v1 (Jan. 2012) | 131.8 | 15261 | 25228 | 46280 (34696) | External |
Notes: (a) ref. 15; (b) refs. 16–25; (c) heterogonic; (d) sex also determined by the environment; (e) INSDC assembly accession where available; (f) http://www.broadinstitute.org/crd/wiki/index.php/N50; (g) author gene-set extended by additional isoform predictions from WormBase; (h) awaiting submission of gene set; (i) an improved C. angaria assembly will be available in WS231.