Table 1. Published nematode genomes.
Species | Systematic position (Blaxter Clade, Helder Clade*) | Year Published | Technology | Genome Size (Mbp)† | Number of chromosomes or scaffolds in assembly† | Scaffold N50 (kbp)†,‡ | AT content (%)† | Number of genes/ proteins† |
---|---|---|---|---|---|---|---|---|
Caenorhabditis elegans |
V, 9E |
19982 |
Sanger |
100 |
6 chromosomes |
17,494 |
64.6 |
20,461 / 25,244 |
Caenorhabditis briggsae |
V, 9E |
20033 |
Sanger |
108 |
6 chromosomes + 5 fragments |
17,485 |
62.6 |
NA / 21,986 |
Brugia malayi |
III, 8 |
200752 |
Sanger |
96 |
27,210 |
38 |
69.4 |
18,348 / 21,332 |
Meloidogyne hapla |
IV, 11 |
200824 |
Sanger |
53 |
3,452 |
38 |
72.6 |
NA / 13,072 |
Meloidogyne incognita |
IV, 11 |
200827 |
Sanger |
82 |
9,538 |
13 |
68.6 |
NA / 21,232 |
Pristionchus pacificus |
V, 9B |
200853 |
Sanger |
172 |
18,083 |
1,245 |
57.2 |
NA / 24,217 |
Caenorhabditis angaria |
V, 9E |
201033 |
Illumina |
80 |
33,559 |
9 |
63.7 |
22,662 / 26,265 |
Trichinella spiralis |
I, 2A |
201136 |
Sanger |
64 |
6,863 |
6,373 |
66.1 |
16,380 / 16,380 |
Bursaphelenchus xylophilus |
IV, 10D |
201137 |
Roche 454, Illumina |
75 |
5,527 |
950 |
59.6 |
18,074 / 18,074 |
Ascaris suum | III, 8 | 201125 | Illumina | 273 | 29,831 | 408 | 62 | 18,542 / 18,542 |
Nuclear genome only, not including mitochondria or endosymbionts, computed from WormBase release WS227 where available or from data URLs in Table 2.
Scaffold N50: Half the assembly is in scaffolds of this size or larger in the nuclear genome.