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. 2012 Jan 1;1(1):42–50. doi: 10.4161/worm.19046

Table 2. Nematode species for which published or draft genome data are publicly available.

Species (Strain) Status Genome data and browser URLs
Ascaris suum (Davis)
ongoing
www.ncbi.nlm.nih.gov/nuccore/320321071
Ascaris suum (Victoria/Ghent)
published
ftp://ftp.wormbase.org/pub/wormbase/species/a_suum/
Ascaris suum (WTSI)
ongoing
www.sanger.ac.uk/resources/downloads/helminths/ascaris-suum.html
Brugia malayi (TRS)
published
www.wormbase.org/db/gb2/gbrowse/b_malayi
ftp://ftp.wormbase.org/pub/wormbase/species/b_malayi/
Bursaphelenchus xylophilus (Ka4C1)
published
www.genedb.org/Homepage/Bxylophilus
Caenorhabditis angaria (PS1010)
published
www.wormbase.org/db/gb2/gbrowse/c_angaria/
ftp://ftp.wormbase.org/pub/wormbase/species/c_angaria/
Caenorhabditis brenneri (PB2801)
complete
www.wormbase.org/db/gb2/gbrowse/c_brenneri/
ftp://ftp.wormbase.org/pub/wormbase/species/c_brenneri/
Caenorhabditis briggsae (AF16)
published
www.wormbase.org/db/gb2/gbrowse/c_briggsae/
ftp://ftp.wormbase.org/pub/wormbase/species/c_briggsae/
Caenorhabditis elegans (N2)
published
www.wormbase.org/db/gb2/gbrowse/c_elegans/
ftp://ftp.wormbase.org/pub/wormbase/species/c_elegans/
Caenorhabditis japonica (DF5081)
complete
www.wormbase.org/db/gb2/gbrowse/c_japonica/
ftp://ftp.wormbase.org/pub/wormbase/species/c_japonica/
Caenorhabditis remanei (PB4641)
complete
www.wormbase.org/db/gb2/gbrowse/c_remanei/
ftp://ftp.wormbase.org/pub/wormbase/species/c_remanei/
Caenorhabditis sp 11 (JU1373)
ongoing
genome.wustl.edu/pub/organism/Invertebrates/Caenorhabditis_sp11_JU1373/
Caenorhabditis sp 5 DRD-2008 (JU800)
ongoing
 
Caenorhabditis sp 7 (JU1286)
ongoing
ftp://ftp.wormbase.org/pub/wormbase/species/c_sp7/
Caenorhabditis sp 9 (AC-2009 JU1422)
in annotation
ftp://ftp.wormbase.org/pub/wormbase/species/c_sp9/
Dictyocaulus viviparus (Not specified)
ongoing
www.nematode.net/
Dirofilaria immitis (Edinburgh/TRS/Basel)
in annotation
 
Globodera pallida (Not specified)
ongoing
www.sanger.ac.uk/sequencing/Globodera/pallida/
Hemonchus contortus (Moredun)
ongoing
www.sanger.ac.uk/Projects/H_contortus/
ftp://ftp.wormbase.org/pub/wormbase/species/h_contortus/
Heterorhabditis bacteriophora (M31e)
in annotation
genome.wustl.edu/genome.cgi?GENOME=Heterorhabditis%20%20bacteriophora
Howardula aoronymphium (Jaenike)
ongoing
 
Litomosoides sigmodontis (lab strain established from Cameroon by Odile Bain)
ongoing
 
Loa loa (Nutman/Broad)
in annotation
www.broadinstitute.org/annotation/genome/filarial_worms/MultiHome.html
Meloidogyne hapla (VW9)
published
www.hapla.org/
www.wormbase.org/db/gb2/gbrowse/m_hapla/
ftp://ftp.wormbase.org/pub/wormbase/species/m_hapla/
Meloidogyne incognita (Morelos)
published
www.inra.fr/meloidogyne_incognita
www.wormbase.org/db/gb2/gbrowse/m_incognita/
ftp://ftp.wormbase.org/pub/wormbase/species/m_incognita/
Nippostrongylus brasiliensis (lab strain)
ongoing
www.sanger.ac.uk/sequencing/Nippostrongylus/brasiliensis/
Onchocerca ochengi (Cameroon/wild)
in annotation
 
Onchocerca volvulus (Nutman/Broad)
ongoing
www.broadinstitute.org/annotation/genome/filarial_worms/MultiHome.html
Onchocerca volvulus (WTSI/wild Liberia)
ongoing
www.sanger.ac.uk/resources/downloads/helminths/onchocerca-volvulus.html
Oscheius tipulae (CEW1)
ongoing
nematodes.org/downloads/959nematodegenomes/blast
Pristionchus pacificus (California)
published
www.pristionchus.org/
www.wormbase.org/db/gb2/gbrowse/p_pacificus/
ftp://ftp.wormbase.org/pub/wormbase/species/p_pacificus/
Strongyloides ratti (ED321)
in annotation
www.sanger.ac.uk/resources/downloads/helminths/strongyloides-ratti.html
Teladorsagia circumcincta (Not specified)
ongoing
www.sanger.ac.uk/resources/downloads/helminths/teladorsagia-circumcincta.html
Trichinella spiralis (Not specified)
published
www.nematode.net/
www.wormbase.org/db/gb2/gbrowse/t_spiralis/
ftp://ftp.wormbase.org/pub/wormbase/species/t_spiralis/
Trichuris muris (E isolate)
ongoing
www.sanger.ac.uk/Projects/T_muris/
Wuchereria bancrofti (Nutman/Broad) in annotation www.broadinstitute.org/annotation/genome/filarial_worms/MultiHome.html