Table 3. Current sequencing costs, throughput and read lengths.
Technology | Read length (bases) | Error model | Recommended sequencing depth | Cost per base (£/€/$) | Cost per 100 Mb genome (£/€/$) | Throughput (bases/ day/ instrument) | Time per 100 Mb genome per instrument (days) |
---|---|---|---|---|---|---|---|
Sanger dideoxy |
1000–1500 |
Gold standard, accurate base quality, typical error probability 0.0001 |
10 X |
10−3 |
106 |
106 |
103 |
Roche 454 FLX/FLX+ |
400–1000 |
Homopolymer errors |
20–30 X |
10−5 |
2 × 104 |
5 × 108 |
5 |
Illumina HiSeq2000 | 100–150 | Typical error probability 0.01, Lower quality toward end of read | 50–100 X | 10−7 | 103 | 1010 | 1 |