Table 6.
KOBAS-based pathway analysis of the up-regulated genes affected by salt stress in the tolerant genotype.
| The pathway and the gene accession number | Gene description | P value |
|---|---|---|
| Hua 11 shoot | ||
|
| ||
| Protein processing in endoplasmic reticulum |
0.00018 | |
| Contig998_s_at | Heat shock protein 70 | |
| Contig5096_at | Hypoxia upregulated 1 | |
| Contig8758_at | UDP-glucose : glycoprotein glucosyltransferase | |
| Contig12326_at | Dolichyl-diphosphooligosaccharide-protein glycosyltransferase | |
| Contig9420_at | ||
| Contig10285_at | OST3/OST6 family protein | |
| Contig9432_at | Alpha 1,3-glucosidase | |
| Contig2576_at | Protein disulfide-isomerase A6 | |
| PRPP biosynthesis I | 0.0025 | |
| Contig5081_at | Ribose-phosphate pyrophosphokinase 4 | |
| Contig8025_at | ||
| Jasmonic acid biosynthesis | 0.0033 | |
| Contig3523_at | Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase | |
| Contig1737_at | Lipoxygenase1 | |
| Contig2305_at | Lipoxygenase2 | |
| Contig2306_s_at | Lipoxygenase2 | |
| N-Glycan biosynthesis | 0.0039 | |
| Contig12326_at | Dolichyl-diphosphooligosaccharide-protein glycosyltransferase | |
| Contig9420_at | ||
| Contig10285_at | OST3 and OST6 domain-containing protein | |
| Contig9432_at | Alpha 1,3-glucosidase | |
| 13-LOX and 13-HPL pathway | 0.0052 | |
| Contig1737_at | Lipoxygenase1 | |
| Contig2305_at | Lipoxygenase2 | |
| Contig2306_s_at | Lipoxygenase2 | |
| Linoleic acid metabolism | 0.0073 | |
| Contig1737_at | Lipoxygenase1 | |
| Contig2305_at | Lipoxygenase2 | |
| Contig2306_s_at | Lipoxygenase2 | |
| Ribosome biogenesis in eukaryotes | 0.011 | |
| Contig6911_at | Nonsense-mediated mRNA decay protein 3 | |
| Contig3756_at | Homolog of nucleolar protein NOP56 | |
| Contig9010_at | Exportin 1A | |
| Contig13525_at | Serine/threonine-protein kinase Rio1 | |
| Contig7441_at | H/ACA ribonucleoprotein complex subunit 4 | |
| RNA transport | 0.012 | |
| Contig17611_at | Nucleoporin, Nup133/Nup155-like protein | |
| Contig9719_at | Nuclear pore complex protein | |
| Contig8398_at | Translation initiation factor eIF-3 subunit 7 | |
| Contig8248_at | Armadillo/beta-catenin-like repeat-containing protein | |
| Contig6911_at | Nonsense-mediated mRNA decay protein 3 | |
| Contig9010_at | Exportin 1A | |
| Plant-pathogen interaction | 0.022 | |
| Contig22790_at | Coronatine-insensitive protein 1 | |
| Contig7549_at | Calcium-binding protein CML24 | |
| Contig14854_at | Mitogen-activated protein kinase kinase kinase 1 | |
| Contig3262_at | Elongation factor Tu | |
| Contig9645_at | Putative calcium-binding protein CML21 | |
| Contig9408_at | Chitin elicitor receptor kinase 1 | |
| Spliceosome | 0.029 | |
| Contig3732_s_at | Pre-mRNA-processing-splicing factor | |
| Contig998_s_at | Heat shock protein 70-4 | |
| Contig12582_at | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 | |
| Contig16451_at | DEAD-box ATP-dependent RNA helicase 21 | |
| Contig6096_at | Mitochondrial HSO70 2 | |
| Sphingolipid metabolism | 0.038 | |
| Contig10984_at | Neutral ceramidase | |
| Contig6172_at | Dihydroceramidase | |
| Very long chain fatty acid biosynthesis | 0.049 | |
| HVSMEb0010E16r2_s_at | 3-ketoacyl-CoA synthase 6 | |
| Contig3523_at | Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase | |
| Sucrose biosynthesis | 0.049 | |
| Contig6623_s_at | Sucrose phosphate synthase 2 | |
| Contig460_s_at | Sucrose synthase 4 | |
|
| ||
| Hua 11 root | ||
|
| ||
| Superpathway of polyamine biosynthesis | 0.005 | |
| Contig5328_at | Agmatine deiminase | |
| Contig5994_s_at | Arginine decarboxylase 1 | |
| Fatty acid biosynthesis | 0.039 | |
| Contig5989_s_at | Acetyl-CoA carboxylase 1 | |
| Indole-3-acetyl-amino acid biosynthesis | 0.047 | |
| Contig12102_at | Indole-3-acetic acid-amido synthetase | |
| Serine biosynthesis | 0.047 | |
| Contig5879_at | Phosphoserine aminotransferase | |
| IAA degradation IV | 0.047 | |
| Contig12102_at | Indole-3-acetic acid-amido synthetase | |
| Phospholipid desaturation | 0.047 | |
| Contig7662_at | Omega-3 fatty acid desaturase | |