Table 2.
Percentage of CDSs from chromosome of Eklund 17B (NRP) scored positive by microarray analysis of strains of Group II C. botulinum
| Strain | Toxin subtype | Clade | Total number of CDSs present | % of control CDSs present |
|---|---|---|---|---|
| Eklund 17B (NRP) |
B4 |
1 |
3384 |
100 |
| Eklund 2B |
B4 |
1 |
3384 |
100 |
| IFR 05/020 |
B4 |
1 |
3383 |
100 |
| Colworth BL151 |
B4 |
1 |
3383 |
100 |
| IFR 05/029 |
B4 |
2 |
2959 |
87 |
| IFR 06/001 |
F6 |
2 |
2917 |
86 |
| IFR 05/025 |
B4 |
2 |
2900 |
86 |
| Eklund 202F |
F6 |
2 |
2863 |
85 |
| 2129B |
B4 |
2 |
2848 |
84 |
| CDC 5900 |
B4 |
2 |
2846 |
84 |
| ATCC 17844 |
B4 |
2 |
2845 |
84 |
| Hobbs FT50 |
B4 |
2 |
2829 |
84 |
| Kapchunka B2 |
B4 |
2 |
2806 |
83 |
| CDC 4627 U-1 |
B4 |
2 |
2792 |
83 |
| Kapchunka B5 |
B4 |
2 |
2777 |
82 |
| Hobbs FT10 |
F6 |
2 |
2761 |
82 |
| Craig 610 |
F6 |
2 |
2758 |
82 |
| IFR 06/005 |
F6 |
2 |
2750 |
81 |
| CDC 3875 |
B4 |
2 |
2716 |
80 |
| CB-K-37E |
E1 |
3 |
2428 |
72 |
| CB-K-32E |
E6 |
3 |
2424 |
72 |
| CB-K-36E |
E6 |
3 |
2404 |
71 |
| CB-K-24E |
E1 |
3 |
2403 |
71 |
| IFR 02/050 |
E3 |
3 |
2403 |
71 |
| CDC 8073 |
E2 |
3 |
2401 |
71 |
| CB-K-23E |
E1 |
3 |
2351 |
69 |
| Foster B96 |
E3 |
3 |
2292 |
68 |
| CB-K-16E |
E1 |
3 |
2281 |
67 |
| CB-S-3E |
E1 |
3 |
2276 |
67 |
| CB-K-40E |
E3 |
3 |
2263 |
67 |
| CB-S-27E |
NTE |
3 |
2249 |
66 |
| CB-K-18E |
E1 |
3 |
2242 |
66 |
| Prevot P34 |
E3 |
3 |
2164 |
64 |
| CB-K-34E |
E1 |
3 |
2120 |
63 |
| CB-S-20E |
NTE |
3 |
2095 |
62 |
| CB-S-15E |
NTE |
3 |
2072 |
61 |
| Dolman VH |
E3 |
3 |
2064 |
61 |
| Hazen 36208 |
E1 |
3 |
2058 |
61 |
| CB-K-9E |
E6 |
3 |
2024 |
60 |
| CB-K-3E |
E3 |
3 |
2023 |
60 |
| CDC 7854 |
E1 |
3 |
2012 |
59 |
| Beluga |
E1 |
3 |
1990 |
59 |
| CB-K-19E | E1 | 3 | 1946 | 58 |
Sixty-mer probes were used to represent 3384 chromosomal sequences of Eklund 17B (NRP) on a microarray. Data show the number of these CDSs found in each test strain by microarray analysis. CDSs were considered to be present if the test probe signal was within 8-fold of the control probe signal and significantly above the background. NTE= no toxin gene detected but strain originally isolated containing type E neurotoxin gene.