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. 2013 Jun 4;2:e00523. doi: 10.7554/eLife.00523

Table 1. Summary of main association analyses in GenCord.

See Table 1–source data 1

DOI: http://dx.doi.org/10.7554/eLife.00523.011

Table 1—source data 1.
Significant eQTL, mQTL and eQTM associations found in each cell-type.
DOI: http://dx.doi.org/10.7554/eLife.00523.012
elife00523s001.zip (3.3MB, zip)
DOI: 10.7554/eLife.00523.012
Test Samples Window size Unit FDR (%) Nominal p value Fibroblasts LCLs T-cells
eQTLs Genotypes and expression 183 (F); 185 (L); 186 (T) 1 Mb Genes 10 2.2 × 10−5 (F); 3.2 × 10−5 (L); 1.8 × 10−5 (T) 2433 3372 2115
mQTLs Genotypes and methylation 107 (F); 111 (L); 66 (T) 5 kb Methylation sites 10 4.4 × 10−4 (F); 7.9 × 10−4 (L); 1.3 × 10−3 (T) 14,189 22,411 32,318
eQTMs Methylation and expression 110 (F); 118 (L); 66 (T) 50 kb Genes 10 7.6 × 10−5 (F); 7 × 10−4 (L); 6.9 × 10−4 (T) 596 3680 3838