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. 2013 May 9;12:46. doi: 10.1186/1475-2859-12-46

Table 4.

Sequences of the primers used for constructing strains E.coli K4-pTrc rfaH , EcK4r1 and EcK4r3, and for real time PCR experiments

Primer Sequence
rfaHpTrc1
5′-TAAAGGAGGTATACAAAAATGCAATCCTGGTATTTACTGTAC-3′
rfaHpTrc2
5′-TTAGAGTTTGCGGAACTCGGTAT-3′
16Sq_Up
5′- GGTGTAGCGGTGAAATGCGTAGAG-3′
16Sq_Dw
5′- CAAGGGCACAACCTCCAAGTC-3′
qkfoC_Up
5′-TTTTCCCTGCCGCACGATCC-3′
qkfoC_Dw
5′-TTCGGTCTGTTGAAGGAGCAATGG-3′
qkfoA_Up
5′-GGATTTAGCGGAAGGGCATGTG-3′
qkfoA_Dw
5′-TTCTGGTGATGACCAACTTTCAGC-3′
P1=pK4EC05_Up
5′-CAGCACAGCAGAGCGAAGTGCATCATATCCTTCCAGATTTAAATTCTTCAAATTAACCCTCACTAAAGGGCG-3′
P2=pk4EC05_Dw
5′-AAACTGTGATCGGGCGTAGGAACCCGCGTAGTCATCGTCGGCGCAGAAGTTTAGAGTTTGCGGAACTCGGTAT-3′
P3=LacZ_Up
5′-CACCCTGGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAAATTAACCCTCACTAAAGGGCGG-3′
P4=LacZ_Dw
5′- AAAAGAATAAACCGAACATCCAAAAGTTTGTGTTTTTTAAATAGTACATAATGGATTTCCTTACGCGAAATACGGGCAGACATGGCCTGCCCGGTTATTTAGAGTTTGCGGAACTCGGTATTC-3′
P5=FRT_Dw
5′-TAATACGACTCACTATAGGGCT-3′
P6=pGapA_Up
5′-CCCTCGAGGGCCTTTAAAATTCGGGGCGCCGA-3′
P7=pGapA_Dw
5′-CGGGATCCCGATATTCCACCAGCTATTTGTTAG-3′
P8=rfaH_Up 5′-CGGGATCCCGATGCAATCCTGGATTTTACTGTAC-3′