Skip to main content
. 2013 Jun 5;8(6):e65798. doi: 10.1371/journal.pone.0065798

Table 3. Ordinal regression analyses with tumour pAkt-IR and nCB1IR as the independent variables and the Gleason score, %ca or Ki67-index as the dependent variable.

Main effects model Interaction term included
Estimate Z-value Estimate Z-value
Gleason score
pAkt-IR 1.17±0.23 5.01 −0.40±0.83 −0.48
nCB1IR 0.49±0.21 2.36 −1.30±0.93 −1.41
pAkt-IR×nCB1IR 0.66±0.34 1.97
%ca
pAkt-IR 0.44±0.21 2.09 −2.37±0.86 −2.74
nCB1IR 0.86±0.21 4.02 −2.18±0.94 −2.33
pAkt-IR×nCB1IR 1.16±0.35 3.28
Ki67-index
pAkt-IR 0.94±0.23 4.05 −0.16±0.87 −0.19
nCB1IR 0.51±0.21 2.43 −0.69±0.94 −0.73
pAkt-IR×nCB1IR 0.45±0.35 1.31

The coefficients (± standard error) were determined from ordinal regressions (cumulative logit model) undertaken in the R statistical package (function vglm in the VGAM bundle). Gleason scores were divided as 4–5, 6, 7 and 8–10. The %ca and Ki67-index scores were divided into quartiles. In every case, the assumption of proportional odds was upheld. Significance levels for the Z-values are: ±1.96 for P = 0.05, ±2.58 for P = 0.01 and ±3.29 for P = 0.001. Note that in the analyses, the values returned for a variable in the main effects model represent its total effect when the other variable is included. In the interaction term model, the value for the individual variable is for a constant value of the other variable. The model returns three intercept coefficients for each level of the response, the reference level being the lowest level. These were as follows: Gleason score main effects model, −3.06, −4.51 and −5.52; model with interaction, 1.16, −0.30, −1.32; %ca main effects model, −1.66, −2.95, −4.01; model with interaction, 5.69, 4.36, 3.26; Ki67-index main effects model, −2.47, −3.70, −4.92; model with interaction, 0.41, −0.82, −2.04.