TABLE VI.

The number of SNPs significant at P-value thresholds of 0.05 and 0.01 from the lmq or the PLINK test-missing function for the endometriosis data

lmq	test-missing	P-value<0.05	P-value<0.01
Significant
Yes	Yes	1,091	202
Yes	No	25,010	5,221
No	Yes	15,878	9,648
No	No	454,753	481,661

The total number of SNP is 496,733, and the number of SNP with a missing rate >0 for both cases and controls is 258,628.