TABLE VII.

GenTrain scores and cluster separation scores for the most problematic 11 SNPs identified by the lmq analysis

		Likelihood ratio		GenTrain score		Separation score
chr	SNP	ssa	lmq	Case	Control	Case	Control	Missingness
1	rs9970392	8.140	49.900	0.775	0.813	0.241	0.524	0.017
2	rs4621162	6.700	43.340	0.766	0.788	0.958	0.861	0.041
4	rs3924900	0.230	89.748	0.808	0.832	0.337	0.540	0.020
4	rs7689397	4.784	42.214	0.851	0.852	1.000	0.526	0.021
6	rs204990	0.215	43.923	0.838	0.887	0.437	0.765	0.016
8	rs4738899	1.487	52.875	0.803	0.848	0.405	0.589	0.018
9	rs10810402	20.180	78.988	0.844	0.906	1.000	0.950	0.016
9	rs7862315	6.116	48.435	0.765	0.836	0.372	0.669	0.015
11	rs10834007	0.387	35.344	0.803	0.882	0.320	0.801	0.020
13	rs9596897	0.423	42.379	0.810	0.860	0.384	0.701	0.014
13	rs1330047	0.000	39.074	0.806	0.824	0.359	0.513	0.014