Table 1.
Programs Tested
| | |||||
|---|---|---|---|---|---|
| |
Prokaryote vs. |
Unichromosomal vs. |
Standalone |
Block |
User |
| Eukaryote | Multichromosomal | vs. Server | Detection | Interface | |
|
Abacas |
Prokaryote |
Multichromosomal |
Standalone |
nucmer, promer |
Command line |
|
CONTIGuator |
Prokaryote |
Multichromosomal |
Standalone |
Blast+ |
Command line |
|
fillScaffolds |
Eukaryote |
Multichromosomal |
Standalone |
nucmer, promer |
Command line |
|
Mauve Aligner |
Prokaryote |
Unichromosomal |
Standalone |
Mauve |
GUI |
|
OSLay |
Both |
Unichromosomal |
Standalone |
nucmer |
GUI |
|
Projector2 |
Prokaryote |
Unichromosomal |
Server |
BLAT |
Web |
|
r2cat |
Both |
Multichromosomal |
Standalone |
- |
GUI |
| SIS | Prokaryote | Unichromosomal | Both | nucmer, promer | Web, Command line |