Table 3. Strongest associated, genotyped single nucleotide polymorphisms (SNPs) for corneal astigmatism.
SNP | CHR | bp | Allele | Raine (n=1013) |
TEST/BATS (n=1771) |
P value | Meta-analysis |
|||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Effect | SEM | P value | Effect | SEM | Beta | SEM | P value | |||||
rs1151008 |
12 |
31,988,627 |
G |
−0.138 |
0.046 |
3.07×10−3 |
−0.15 |
0.038 |
7.50×10−5 |
−0.144 |
0.03 |
1.37×10−6 |
rs1164064 |
3 |
1.11E+08 |
A |
0.212 |
0.043 |
9.91×10−7 |
0.065 |
0.037 |
7.50×10−2 |
0.134 |
0.028 |
1.86×10−6 |
rs11841001 |
13 |
75,147,104 |
A |
0.185 |
0.072 |
1.10×10−2 |
0.195 |
0.057 |
6.30×10−4 |
0.208 |
0.045 |
4.31×10−6 |
rs7651778 |
3 |
1.58E+08 |
C |
0.096 |
0.043 |
2.64×10−2 |
0.139 |
0.036 |
9.30×10−5 |
0.126 |
0.028 |
4.76×10−6 |
rs11859036 |
16 |
78,863,052 |
A |
0.145 |
0.043 |
8.74×10−4 |
0.107 |
0.037 |
3.60×10−3 |
0.128 |
0.029 |
7.03×10−6 |
rs438465 |
6 |
1.7E+08 |
C |
−0.211 |
0.058 |
2.70×10−4 |
−0.143 |
0.051 |
5.50×10−3 |
−0.173 |
0.039 |
7.22×10−6 |
rs979976 |
2 |
1.37E+08 |
A |
0.163 |
0.047 |
4.81×10−4 |
0.102 |
0.038 |
7.20×10−3 |
0.134 |
0.03 |
7.52×10−6 |
rs4805442 |
19 |
34,780,233 |
A |
−0.192 |
0.06 |
1.48×10−3 |
−0.141 |
0.05 |
4.40×10−3 |
−0.168 |
0.038 |
1.18×10−5 |
rs10079889 |
5 |
33,011,247 |
A |
0.165 |
0.052 |
1.50×10−3 |
0.124 |
0.043 |
4.30×10−3 |
0.145 |
0.033 |
1.38×10−5 |
rs2116538 | 2 | 1.37E+08 | A | −0.162 | 0.052 | 1.92×10−3 | −0.135 | 0.044 | 2.10×10−3 | −0.146 | 0.034 | 1.63×10−5 |
Top ranking SNPs at loci identified through genome-wide meta-analysis following adjustment for age and sex as well as the results from individual cohorts.