Table 2. Functional assessment of differentially expressed transcripts.

GO term	Description	Percentage	p-value
A
GO:0009058	biosynthetic process	30.3	8.00E-08
GO:0050896	response to stimulus (hormone)	30.8 (9)	7.70E-08
GO:0019725	cellular homeostasis	2.3	8.30E-06
GO:0008361	regulation of cell size	3.2	1.50E-04
GO:0008152	metabolic process	60.1	1.60E-03
B
GO:0050896	response to stimulus (hormone)	36.4 (10)	1.80E-11
GO:0010468	regulation of gene expression	17.2	1.20E-07
GO:0009058	biosynthetic process	32.8	1.30E-05
GO:0042592	homeostatic process	3.7	4.90E-05
GO:0009908	flower development	4.4	0.00031

Sequences that were differentially expressed in leaf (A) or SAM (B) during the short-day exposure were subjected to functional category assessment using AgriGO. A total of 11,939 (out of 13,609) or 2507 (out of 2951) sequences are successfully categorized and a representative of the top enriched GO terms for molecular processes (controlled at FDR <0.05) are shown. All functional categories identified are given in Table S2.