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. 2013 Apr 26;288(23):16348–16360. doi: 10.1074/jbc.M113.474643

TABLE 1.

List of PCR primers used in this study

Name Direction Sequence
Mouse RT-QPCR primers
    Gapdh Forward 5′-GCTTGTCATCAACGGGAAGC-3′
Reverse 5′-TTTGATGTTAGTGGGGTCTCGC-3′
    Ttf-1 Forward 5′-AAAACTGCGGGGATCTGAG-3′
Reverse 5′-TGCTTTGGACTCATCGACAT-3′
    Srebf1 Forward 5′-CCAGAGGGTGAGCCTGACA-3′
Reverse 5′-AGCCTCTGCAATTTCCAGATCT-3′
    Srebf2 Forward 5′-TGTGAACCTGGCCGAGTGT-3′
Reverse 5′-CGCTGTCAGGTGGATCTCAA-3′
    Hmga2 Forward 5′-GGGCGCCGACATTCAAT-3′
Reverse 5′-ACTGCAGTGTCTTCTCCCTTCAA-3′

Human RT-QPCR primers
    GAPDH Forward 5′-GGAGTCAACGGATTTGGTCGTA-3′
Reverse 5′-GGCAACAATATCCACTTTACCAGAGT-3′
    TTF1 Forward 5′-CGTTCTCAGTGTCTGACATCTTGA-3′
Reverse 5′-CCTCCATGCCCACTTTCTTG-3′
    SREBF1 Forward 5′-GCTCCTCCATCAATGACAAAATC-3′
Reverse 5′-TGCAGAAAGCGAATGTAGTCGA-3′
    SREBF2 Forward 5′-CGAATTGAAAGACCTGGTCATG-3′
Reverse 5′-TCCTCAGAACGCCAGACTTGT-3′
    HMGA2 Forward 5′-CCCAAAGGCAGCAAAAACAA-3′
Reverse 5′-GCCTCTTGGCCGTTTTTCTC-3′

ChIP QPCR primers
    C9Orf5 (distal) Forward 5′-TGTCTGCCTTAAAAGCTTGTGTTC-3′
Reverse 5′-TTTGCTCCAGTACTTTGCACACTT-3′
    C9Orf5 (proximal) Forward 5′-GGTATTCTAGTATGCAGCTTGGGTTT-3′
Reverse 5′-GAAGCTCCTTTCACTCATTCGTTAA-3′
    SREBF2 (distal) Forward 5′-GAAGCGTGAATTGGCCTTATG-3′
Reverse 5′-TCTGACCCTTTCCCGTTGAT-3′
    SREBF2 (proximal) Forward 5′-GCAAAGCAGAAGACGTAAAATCC-3′
Reverse 5′-CACGGAGGCTTGACAAGGTT-3′
    SPB (distal) Forward 5′-CCGAAGGCTGTAGGGAAGAA-3′
Reverse 5′-GCTCAGGAACACTAGGGATTGC-3′
    SPB (proximal) Forward 5′-TCCACCCACAAAAGCACTGTAG-3′
Reverse 5′-TCTCCCTAGTGGAGGCTCACA-3′

HMGA2 3′-UTR psiCHECK2 site-directed mutagenesis primersa
    Δ1 Forward 5′-CAGGGGACACAGCTTAAGGTACCCTTTTAATTACTG-3′
Reverse 5′-CAGTAATTAAAAGGGTACCTTAAGCTGTGTCCCCTG-3′
    Δ2 Forward 5′-GCTGCTATACACAAGGGTACCGAAAAAAACTTACTG-3′
Reverse 5′-CAGTAAGTTTTTTTCGGTACCCTTGTGTATAGCAGC-3′
    Δ3 Forward 5′-GCCCTGCTTTTGCATGGTACCTCAAAAATATGTG-3′
Reverse 5′-CACATATTTTTGAGGTACCATGCAAAAGCAGGGC-3′

a The KpnI cut site is underlined.