Table 2.
Size and number of encoded selfish genetic elements and biodegradative enzymes in the 7 complete sphingomonad genomes
| Organism | Size (kb) | No. of: |
|||||
|---|---|---|---|---|---|---|---|
| Putative prophage | Phage-like proteins (% of total proteins) | Transposons | Monooxygenases | Dioxygenases | CAZymes | ||
| Novosphingobium aromaticivorans DSM 12444 | |||||||
| Chromosome | 3,561.6 | 5 | 309 (9.3) | 16 | 13 | 19 | 58 |
| Plasmid pNL1 | 184.5 | 1 | 1 | 1 | 13 | 1 | |
| Plasmid pNL2 | 487.3 | 2 | 3 | 8 | |||
| Novosphingobium sp. strain PP1Y | |||||||
| Chromosome | 3,911.5 | 3 | 113 (3.3) | 24 | 10 | 33 | 36 |
| Plasmid Lpl | 192.1 | 1 | 5 | 2 | |||
| Plasmid Spl | 48.7 | 1 | 1 | ||||
| Plasmid Mpl | 1,161.6 | 17 | 5 | 6 | 41 | ||
| Sphingobium chlorophenolicum L-1 | |||||||
| Chromosome 1 | 3,080.8 | 1 | 107 (3.8) | 15 | 9 | 4 | 30 |
| Chromosome 2 | 1,368.7 | 1 | 74 (6.7) | 8 | 6 | 15 | 17 |
| Plasmid pSPHCH01 | 123.7 | 2 | 1 | ||||
| Sphingobium japonicum UT26S | |||||||
| Chromosome 1 | 3,514.8 | 2 | 95 (2.7) | 37 | 9 | 6 | 28 |
| Chromosome 2 | 681.9 | 7 | 2 | 2 | 22 | ||
| Plasmid pUT1 | 31.8 | 5 | |||||
| Plasmid pUT2 | 5.4 | ||||||
| Plasmid pPCHQ1 | 191.0 | 2 | 6 | 2 | 2 | ||
| Sphingobium sp. strain SYK-6 | |||||||
| Chromosome | 4,199.3 | 1 | 88 (2.3) | 29 | 16 | 23 | 25 |
| Plasmid pSLPG | 148.8 | 6 | 1 | ||||
| Sphingomonas wittichii RW1 | |||||||
| Chromosome | 5,382.26 | 2 | 183 (3.8) | 36 | 42 | 38 | 33 |
| Plasmid pSWIT01 | 310.2 | 2 | 9 | 2 | 1 | ||
| Plasmid pSWIT02 | 222.8 | 1 | 31 | 1 | 6 | 2 | |
| Sphingopyxis alaskensis RB2256 | |||||||
| Chromosome | 3,345.2 | 1 | 62 (2.0) | 36 | 9 | 7 | 33 |
| F plasmid | 28.5 | ||||||